Pontivivens nitratireducens: G8E03_12530
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Entry
G8E03_12530 CDS
T06480
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mon
Pontivivens nitratireducens
Pathway
mon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G8E03_12530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mon03019
]
G8E03_12530
03400 DNA repair and recombination proteins [BR:
mon03400
]
G8E03_12530
Enzymes [BR:
mon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G8E03_12530
Messenger RNA biogenesis [BR:
mon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G8E03_12530
DNA repair and recombination proteins [BR:
mon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
G8E03_12530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
AAA_11
TraI_middle
Motif
Other DBs
NCBI-ProteinID:
QIK41516
UniProt:
A0A6G7VNR5
LinkDB
All DBs
Position
complement(2538855..2544398)
Genome browser
AA seq
1847 aa
AA seq
DB search
MRHTEILSHCLSIDLEVDPSKAKIFAIAAVRADDRPALKAMGGISDEFLDQLEAQIGDVA
HPIGHNFLNHDLKHLVATKPRLAKIIQAPIDTLWLNPLAFPRNPYHHLVKHYHDGRLETG
HVNDPELDARLVFDVLANQLDAFVKLSKDEPDALTAYHYLSTRMERAGGFDAVFRYVRGR
ECPDYEQARMAIMRMLDGRACGVRIEQALTRLSSPQNGWPMAYALSWITVASGDPVMPPW
VRAQFREASLIVKHLRDTSCKDPNCAWCAEQNDPVRALERWFGFPSFRPKPVDPEGRPLQ
ERIVDEAMSGNSLLGILPTGTGKSLCYQVPALSRFDTIGALTVVISPLVALMADQVHGME
RAGISCSVTINGMMSMPERQDALNKVRMGDAGILIISPEQLRSPSIRNVLAQREVGLWAI
DEAHCVSKWGHDFRPDYRYLGRFIKEFSGDMPPAPMICLTATAKPEVVADIISHFQTKAG
IELLPLDGGASRTNLAFDVRPTTKATKLSDVLTVLLELLPTDGRSGAAVYCSSRKETERV
AAFLKSQGMDAAHFHAGMSPDDKQTVQEQFRVGELRVIAATNAFGMGIDKPDIRLVIHAD
IPGSLENYLQEAGRAGRDREDAHCVLLFAADDVERQFRLTASSRLARHEIGAILKALRRI
DDRTKKTGKVVATSGEIVRSEKDQTFERDSTTDDTRVKTAVSWLEEAHLVSREENRVQVF
PSSLRVRSVDEAKSRLAEADITQSHRRQLLSIVKHLMSAPADEGVSTDELCGVAGIPPGA
LPRAMATLESLGIARNDVAITVFVHVGVAHSSAQRLAQASALEADLIALMQELAPDLDDR
TPVPLNLAEACQRLRDKAHPDVRPDAIDKLVRGMAQDGRTQEGGQGNISLRKASRNTLLV
TLVRSWRVIQETARVRWLAAELMLTYLTGRLNKGARGKDQQVETTVGDLLAQLTQDAFLK
GVGVRDMTKLMERALMWLHEQGVLTLGKGLTAFRSAMTVHLDPAGGQFTQAHFTPLEEHY
SEQTLQTHVMAAYAETGMRMMTDATRLSEDYFLLNKEQFMKRWMPGVGREVRRQTTSASW
DAIVEKLGNKVQQEIVTDDRDRTNVLVLAGPGSGKTRVLVHRIAYLLRMKREDPQGILVL
AYNRHAAAEIRVRLRALVGDDAMGVTVSTCHSLAMKLVGASFVGQRADTADFDNIVMEAV
RQLEGEGLSKAEAEAQRDTLIQGYRWILVDEYQDIGPEEYQLISAIAGRSLDDADMKLSL
FAVGDDDQNIYAFNGASIEFIRKFEKDYKARPAFLVENYRSTRHIISAANTVISAAPDRM
KLEHEIRINAYRANTPEGGVLAGADGVAQGRVQLLDVPNGDIPQAMAAVDELVRLSRLDP
EWSWARTAVISRDWRKLDAVRTYAEQLKIKVEMANEDLPNIWRLRETQALVSGLRQRQGE
LLGVADILDILNEQAPNKWIDLLAEGIAELARELKAKAMPVPDIVEWLAEWSRDTRGEQR
GLLLLTAHRAKGLEFDHVAILNGGWDNPSKNEDRDAPRRLFYVAMTRAQVSLTVMTSGAH
ALLKPSTPSIIQRKVSPDNPIGVPPARVYHLPNLKYSNLSFPSRYGPRHEIHDAIRTCKV
GDPLRLEYRSSAWEFLDRNGCVLGRMSKSWEYPSGRVLYSGTVGAVVHWRKSDGDERFAH
YARRDTWETVLPELVFAPQRQAAADEDTSETFSTAPTRPISASGGAADKKGDLDRIPMPD
ELAVLSELAQRIYTDSRSWGELIARFSEHGLEVSAKSGGLVVKDSIGGFQICKMSSLGLK
YIEMVRYFGEGFPGHPSPGIADRALGRRGATKSTPPAAGQSIDIIDD
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcacactgaaatattgtcccactgcctatcgattgacttagaagttgatccatca
aaggccaagatatttgccatagcagccgtgcgtgcggatgatcgacccgcgctaaaggca
atgggcggcatctccgacgaattcttggaccagctagaggcgcagatcggtgatgtggcc
catccgattggccacaacttccttaatcacgatctaaagcatctggtcgcaaccaagccc
cgattggctaagatcattcaagcaccgatcgacactctgtggcttaacccgctggccttt
ccgcgaaacccgtaccaccatctggtgaaacactaccatgacgggcggctggaaactggc
catgtgaatgatccggagctggacgcaaggctggtctttgatgtgctggcaaatcaacta
gatgctttcgttaagctgtcaaaggatgagccagacgcgctgaccgcttaccattaccta
tccacacgcatggaacgggcaggcggctttgatgctgtatttcgctatgtgcgcggccgc
gaatgccctgattacgagcaggcgcgcatggcgatcatgcgcatgctggacggacgcgcc
tgtggcgtgcgtatcgagcaggccctaactcgtttgagcagcccccagaatggctggcca
atggcctatgctctgtcctggatcaccgtggcttccggcgatcccgtgatgccaccctgg
gttcgtgcacaatttcgcgaagcatcactgatcgtcaaacacctgcgtgatacatcgtgc
aaggatcccaactgcgcatggtgcgcggaacagaacgatccggtgcgcgcgttggagcga
tggttcggcttccctagctttcgcccaaaacctgttgatcccgaggggcgccccctgcag
gaacgcatcgttgatgaggcaatgtcaggcaacagcctgttggggatcctgccgacggga
actggaaagtccctgtgttatcaggtgcccgcattgtcgaggttcgacacgattggcgcg
ttaacggttgttatctcacccttggtcgcgctgatggcggatcaagtgcatggaatggaa
cgtgccggtatctcttgctcggttacgatcaacggcatgatgtccatgccggaacgtcag
gacgctctcaacaaggtgcggatgggggatgctggtatcctcatcatctctcccgaacag
ttgcgaagcccctctatccgcaacgttttggcccagcgcgaggttgggctgtgggcgatt
gatgaggcccattgcgtgtcgaaatgggggcatgattttcggccagactaccgctatctg
ggccgtttcatcaaggaattttcgggtgacatgccgcccgcacccatgatctgcctgacc
gcaacggcaaagcctgaggtcgtggcggatatcataagccacttccagaccaaggcaggc
attgagctgctgccgctggatggtggcgcatcgcggacaaacttggcgtttgatgtacgg
ccaacgaccaaggcgaccaagctatccgacgtcctaactgtgttgctggaactgctgccc
acagatgggcgttcaggtgcggcggtctattgctcatcgcgcaaagaaacagagcgtgtc
gctgcattcctgaaatcacaagggatggatgcggcacatttccacgcggggatgagccct
gacgacaagcagaccgtacaggagcagttccgcgtaggcgagttgcgcgtgatcgcagcg
accaatgcctttggcatggggatcgataagcccgatatccggttggtcatccacgctgat
attcccggatcgctggaaaattacctacaggaggcaggccgcgcgggacgcgatcgggag
gacgcccattgcgttctgctatttgcggcggatgacgttgaacgccaatttcgcctgacg
gccagctcacgccttgcacggcatgagattggggcaatcctaaaggcacttcgccggatt
gatgatcgcacaaaaaagacaggcaaggttgtcgcaacctcgggtgagattgtgcgctct
gaaaaggatcagacgttcgagcgtgacagcacgaccgacgatacccgcgtaaagacggcc
gtatcatggctggaggaggcgcatctggtatcgcgtgaggaaaaccgagtgcaggttttc
ccgtcctccctgcgggttcggtcggtagatgaggcaaaaagccgtctggccgaggcagat
ataacgcagtcacatcgcaggcaattgctgtctatcgttaaacatctcatgtccgcaccc
gcggatgagggcgtttcaactgatgagctgtgcggtgtggccggcatccctccgggggca
ctgccaagggccatggcgacgcttgaatccctaggcattgcgcgaaatgacgtggcgatc
accgtcttcgttcatgttggtgttgcacactcctcggcgcagaggttggcgcaagcttct
gcactggaagccgatctgattgcgttgatgcaggaacttgccccagatttggatgaccgc
actcccgtgcccctgaaccttgctgaggcctgccaacgattgcgggacaaggcccatcca
gatgtcaggcccgacgcgattgataagctggtgcgcggcatggcacaggacgggcgcact
caggagggggggcagggcaatatttcgctgcgcaaggccagccgcaacacgttattggtt
acgctggtccgatcatggcgagtgatccaagagacagcacgggtccgatggctagccgcc
gaactgatgctcacctacctgacagggcggttgaacaagggtgctcgcggcaaggaccaa
caggttgaaacaacggtcggtgatctgttggcgcagctaacgcaggatgcttttctcaag
ggcgtcggcgtgcgtgatatgacgaagctgatggaacgcgcattgatgtggctgcacgaa
cagggcgtgctaaccctaggcaaggggctgacagcgttccgctccgccatgacggtgcac
ctcgaccctgccggcggccaattcacgcaggcgcactttaccccgttagaggaacattac
agcgagcaaaccctgcaaacccacgtcatggcggcttatgcggaaaccggcatgcgcatg
atgacagatgccacacgcctgtccgaggattacttcctgctcaacaaggagcagttcatg
aagcgctggatgcccggtgtgggtcgtgaagtcaggcggcaaaccaccagcgcatcctgg
gatgcaatcgttgagaagctgggcaacaaggttcagcaggaaatcgtaaccgatgatcgt
gatcggacgaatgttctggtcttggcggggccgggatcaggaaaaacgcgcgttctggtc
caccgaattgcctatttgctgcgtatgaagcgtgaggatccgcagggtattctggttctt
gcatataacaggcacgctgctgctgaaattagagtacgattgcgcgctctggttggggac
gatgctatgggggtgacggtttcaacctgtcattccttggcgatgaagctcgtcggtgcc
agctttgtcggtcaacgcgcggataccgcagattttgataacatcgtgatggaagcagtg
cgtcagctggagggtgagggcctatccaaggccgaggccgaggcgcagcgcgacacgcta
attcagggctatcgttggatcctagtggatgagtatcaagacatcgggccagaggaatac
cagctgatctctgcaattgcaggtcggtcgctggacgatgcagatatgaagcttagcctg
tttgcggtcggggatgacgatcaaaacatctacgcctttaacggcgcatccatcgaattt
atccgcaaattcgaaaaggattataaggcgcgtccggcgtttctggtcgagaattatcgc
tctacccgccacataatttcagccgcgaatactgtgatttcggccgcgccagatcgaatg
aagctggagcatgaaatcaggataaacgcttaccgtgcaaacacgcccgagggaggggtg
cttgcaggcgcagatggcgtggcgcagggcagggttcagctcttggatgttcccaatggg
gatattccacaggctatggcagcggtcgatgaactggtacgcctgtcccgactggatcct
gaatggtcatgggcccgcaccgccgtaatctcacgggattggcgcaaacttgacgcagtg
cgcacctatgccgagcagttgaagatcaaggtcgagatggccaatgaggacctgccaaat
atctggcgattgcgcgaaactcaggcgttggttagcggccttcgacagcggcagggcgaa
ctgttgggagtggccgatatcctcgacattctaaatgagcaggctccaaacaaatggatc
gaccttctggccgaaggtatcgccgagctggcacgagaattgaaggcgaaggcgatgcct
gtgcccgatatcgtcgaatggctggccgaatggtcccgcgacacgcgcggcgaacagcgc
ggcctgctgttactgacagcgcatcgggccaaggggctggaattcgatcatgtggccatt
ctgaatggcggttgggacaacccctcaaaaaacgaagaccgtgacgctccgcggcggctt
ttctacgtggcaatgacccgcgcgcaggtgagcctgaccgtgatgacctcgggtgcccac
gcattgcttaaacccagcacaccatcgatcatccaacgaaaggtgtcgccggataaccca
atcggcgtgccgcccgcccgagtctatcatttgccaaatctcaaatattccaacctgtcc
ttccccagccgatacgggccgcggcacgaaattcacgatgcgatccgaacgtgcaaggtg
ggtgatccgctgcggctagaatacaggagctcggcttgggagttcttggatcgcaatggt
tgcgtcttgggccgaatgtcaaaatcatgggaatatccatcgggtagggtcctttattcc
ggtacggtgggggcagtggtccactggcgcaaatccgacggtgatgaacgatttgcccat
tatgcgcgccgtgacacatgggaaaccgttttgcctgagctagtattcgcgcctcagagg
caggcagctgctgacgaagatacctcggaaacgttttctaccgcacctactagaccaata
tccgcatccggtggtgctgctgataaaaaaggcgatcttgaccgaattccaatgcccgat
gagctagccgtgctgagtgagcttgcgcagcgtatctacaccgatagcaggtcgtggggt
gagctaatcgctcgcttcagtgagcatggattagaggtttcggcaaaatctggcgggctc
gttgttaaggatagtatcggtggatttcagatctgcaaaatgtcctcgctagggcttaaa
tatatcgaaatggtacgatatttcggagagggctttcccggtcacccatcgcccggcatt
gccgatcgtgcactgggtaggcggggcgccacaaaatcgacgccacccgccgctgggcag
agtattgatatcatcgacgattaa
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