Mesorhizobium opportunistum: Mesop_4576
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Entry
Mesop_4576 CDS
T01542
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mop
Mesorhizobium opportunistum
Pathway
mop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mesop_4576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mop03019
]
Mesop_4576
Enzymes [BR:
mop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mesop_4576
Messenger RNA biogenesis [BR:
mop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mesop_4576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AEH88998
UniProt:
F7YDP7
LinkDB
All DBs
Position
complement(4708239..4709672)
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AA seq
477 aa
AA seq
DB search
MTNENTLSGKDTGPDTAELSGFAALGVTGALLKATHNAGFTEPKPIQMQAIPPQLEGRDI
FGIAQTGSGKTAAFALPILSKIIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGA
HVSTALVLGGVSRFSQVKKVAPGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRML
DMGFINDVKRIAKATAPDRQTALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQ
GVVFARTKQKRQVLSTMLADAAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQN
ARQKALNDFRDGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMD
GIAITLCDPSENSKLRQVERIIRTKLPIVADHLGSPDPQRNPAEKNERFEPANDRNDRNG
RRDGRRPGGENKGNGFGKKRFGDKPAFAGERKPEGAKPFKGNNKRRFGGKRPAARAA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaacgaaaacacattgtccggtaaggacactgggcccgacaccgcggaactctcc
ggtttcgcagcgctgggagttacgggtgcgctgctcaaggccacccacaatgccggcttc
accgaaccgaagccgatccaaatgcaggcgatcccgccgcagctggaaggccgcgatata
ttcggcatcgcccagaccggctccggcaagaccgctgcctttgcgctgccgatcctgtcc
aagatcatcgcgctcggcaccaagcggcgcgccaagacgacgcgcgcgctgatccttgcg
ccgacccgcgagcttgcggttcagatcgaggacaccatcaagatcctcgccaagggcgcg
catgtctcgacggcactcgtgctgggcggcgtctcgcgcttcagccaggtgaagaaggtt
gcacccggcgtcgacatcctgatcgccacgcccggccggttgaccgacctggtgcgcgag
ggcgacctcatcctctccgacaccaaatggctggtgctcgacgagggcgaccgtatgctc
gacatgggcttcatcaacgacgtcaagcgcatcgccaaggcgaccgcgcctgaccgccag
acggcgctgttttcggccaccatgccggacgagatcgccgaactggccaagggcctgttg
aagaaccctgtgcgtatcgaagtctcgccgcaaagcaccgcggccgccgagatcgtgcag
ggcgtcgtcttcgcccgcaccaagcagaagcgccaggtgttgtcgacgatgctcgccgat
gcggcgatgaagtccgtcatcatcttttcgcgcaccaagcatggtgccgaccgggtgacc
aaggacctcgagcgcgacggcttcaaggccgccgtcatccatggcaacaagtcgcagaat
gcccgtcagaaggcgctgaacgattttcgcgatggatcggtgcgcatcctcgttgcgacc
gacatcgcggcgcgcggcatcgacgttcccggcatcagccatgtcgtgaatttcgacctg
ccggacgaggctgaaagctacgttcaccgcatcggccgcaccggccgcaacggcatggac
ggcatcgccatcacgctttgcgatccgtcggaaaacagcaagctgcgtcaggtcgagcgc
atcatccgcaccaagctgcctatcgttgccgaccatctcggcagccccgatccgcagcgc
aatccggctgaaaagaacgagcgcttcgagcccgccaatgaccgcaacgaccgcaatggc
cgtcgcgacggcaggcgtccaggcggcgagaacaagggcaacggcttcggcaagaagcgc
ttcggcgacaagccggccttcgccggtgaacgcaagccggaaggcgccaagcccttcaag
ggcaacaacaagcgccgcttcggcggcaagcgtccggcggcgcgggctgcctaa
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integrated database retrieval system
