Moritella sp. 36: HWV03_11700
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Entry
HWV03_11700 CDS
T08847
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
moq
Moritella sp. 36
Pathway
moq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
moq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWV03_11700 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
moq03019
]
HWV03_11700 (rne)
03009 Ribosome biogenesis [BR:
moq03009
]
HWV03_11700 (rne)
Enzymes [BR:
moq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HWV03_11700 (rne)
Messenger RNA biogenesis [BR:
moq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HWV03_11700 (rne)
Ribosome biogenesis [BR:
moq03009
]
Prokaryotic type
rRNA processing factors
HWV03_11700 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QUM91440
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All DBs
Position
2615262..2618876
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AA seq
1204 aa
AA seq
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MLINATQKEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD
RHGFLPLKEISRTYFKQGTGKQRGRPSIKDVVAEGTEVIVQIEKEERGNKGAALTTFISL
AGSYLVLMPNNPRAGGISRRIEGDERTELKSALATLELPEGMGLIVRTAGVGKSAEELEW
DLKVLLNHWGAIQDSAKDRQGTFLIHQESNVIARAIRDYLRRDIGEILIDHPKAFEEAKN
RIKLIRPDFIDRIKLYQGDVPLFNHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSID
INSARATRGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMGPVKNQREVENCL
RDAVRQDRARIQLGRISRFGLMEMSRQRIRPSLGESSTHVCPRCNGQGTIRDNESLALSI
LRLIEEESLKENTNHIVAQVPVPVAAYLLNEKRNSILRLEKRYKVKSFIIPNENLQTPHF
EVSRVKADDDSSELSSTELTQSREFTRYEPKVNNETVQPLVKQINTPEEKKTKPTQAVKK
VTQGAKPKASTQAKSVKPVVDKESVFSRIGKAISGFFNSDEKVVVKETVKEAPKKAVTER
TSSNRHNDEPRKPRTRRNRKPRTPDNVENKQQDANKTADVESKPHNKVEPKQHKKFDEKQ
KTHNQDKSPTQTKNAKEENSSQNQAVLAERRQRRNMRKKVRVNNEQKVSAGLEKTPATAD
VSNTSKSDVNTQPKRTRRGPKNAKTNDVVKTENAKTTKPVAVEVTKPVSAAVTKPVTAAV
TKPVTAAVTKPETAAVTKPVRAAVTKPVTAAVTKPVTAAVTKPVTAAATKPVTAAVTKPV
TAAVTKPVTAAVTKPVTAAVTKPVTAAVTKPVTAAVTKPVTAAVTKPVTAAVTKPVTAAV
TKPVMHTAAAAKPAPVTVEATLAVTPTAKASAERVKIETKPVTAAVTKPVMHTAAAAKPA
PVTVEATLAVTPTAKASAERVKIETKSVTRKMHTAPATRPGAAPVVVETPVVAETPVVAE
TPVVAETPVVAETPVVAETPVVAETPVVAETPVVVETPVVAETPVVVETPVVAETPVVAE
TPVVAETPVVAETPVVAETPVVAETPVVVETPVVSETPVVVVETPVAYQAIEVTSVPALQ
AQGTTSKKTNFTVKMATPQQVAPSQHHFVPKVGVVQRPLIDVAAGPGGSQFASSQSTSPT
KLAK
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaatgcaactcaaaaagaagagttgcgcgttgcgctagttgatgggcaacgc
ctttatgatctagatattgaaagccctggccatgaacaaaagaaagcgaatatctataaa
ggtaaaattacccgcgtagaaccaagcttagaagctgcttttgttgattacggtgcagac
cgccacggtttccttcctcttaaagaaatctctcgcacttacttcaaacaaggtactggt
aagcaacgcggacgtccaagcattaaggatgttgttgcagaaggtaccgaagtaattgtt
cagattgaaaaagaagaacgtggtaacaaaggtgcagcattaacgactttcattagttta
gctggtagttatcttgttctaatgccaaacaatcctcgtgcaggcggtatttcacgtcgc
atcgaaggtgatgaacgtacagaacttaaatctgcacttgctacattagaattaccagaa
ggcatgggactgattgttcgtactgctggtgtgggtaaatctgctgaagaattagaatgg
gatcttaaagtactgttaaatcattggggagcaatccaagatagtgctaaagaccgtcaa
ggtaccttcttaatccaccaagaaagtaacgtgatcgcccgtgctattcgtgactatctt
cgtcgtgatattggtgaaatcctcattgatcatccaaaagcgtttgaagaagctaaaaac
cgcatcaaattaattcgtccagactttattgatcgtattaaattgtatcaaggtgatgtt
cctttattcaatcactaccaaattgaaactcaaatcgaatcagctttccaacgcgaagtt
cgtctaccatcaggcggttcaattgtaattgatccaactgaagccttaacttcaattgat
attaactctgcacgtgcaacacgcggtggtgatattgaagaaacagcattaaacactaac
ttagaagccgcagatgaagttgctcgtcaactacgtctacgagatcttggtggccttgtt
gttatcgattttatcgatatgggtccagttaaaaaccaacgtgaagttgaaaactgctta
cgtgacgcggtacgacaagatcgagcgcgaattcaattaggtcgtatctctcgatttggt
ctaatggaaatgtctcgtcaacgtatccgcccttctcttggtgaatcaagtacgcatgtc
tgccctcgctgtaatggtcaaggtacgatccgtgataatgaatctttagcactttctatt
ctacgtttaatcgaagaagaatctctaaaagagaatacaaatcacatcgtagcgcaagta
cctgttccagttgctgcttacctactaaatgaaaaacgtaactcaatcctacgtttagag
aaacgttacaaagttaaaagctttatcattccaaatgagaacttacaaacacctcatttt
gaagtgtctcgtgttaaagcggatgacgatagctcagagttatcgagtactgaactgaca
cagtcacgtgaatttactcgttatgaacccaaagtaaataacgaaacagttcaacctctt
gtgaagcaaattaacacgcctgaagagaaaaaaactaaaccgactcaagcagttaaaaaa
gtaacacaaggtgcaaaacctaaggcatctactcaagctaaatcagtgaagcctgtagta
gacaaagaatcggtatttagccgtattggtaaagcaatttctgggttctttaatagcgac
gaaaaagttgtcgtaaaagaaacagttaaagaagcacctaaaaaggcggtaacagaaaga
acatcgagcaaccgtcataatgatgagcctcgtaaaccacgtacccgtcgcaatcgtaaa
cctcgaactcctgataatgttgagaacaaacaacaagacgctaataaaacagccgatgtt
gaatcgaaaccgcataacaaggtggaaccgaaacagcataaaaagttcgatgagaaacaa
aaaacgcacaatcaagataagtcgcctacacagactaaaaatgcgaaagaagaaaacagc
tcacaaaatcaagctgttttagctgaacgtcgccaacgccgaaatatgcgtaaaaaagta
cgagtaaacaatgaacaaaaagtatctgcaggattagaaaaaacacctgcaactgctgat
gtttcgaacacgtctaagtctgatgtaaatacgcaacctaaacgtactcgtcgtggccct
aaaaatgctaaaactaacgatgtagtaaaaactgaaaatgcaaaaacaactaaacctgta
gcggttgaagtgactaaacctgtatcagcagcggtaactaaacctgtaacagcagcagta
actaaacctgtaacagcagcagtaactaaacctgaaacagcagcagtaactaaacctgta
agagcagcagtaactaaacctgtaacagcagcggtaactaaacctgtaacagctgcagta
actaaacctgtaacagcggcagcaactaaacctgtaacagcagcagtcactaaacctgta
acagctgcagtaactaaacctgtaacagctgcagtaactaagcccgtaacagctgcagtc
actaaacctgtaacagctgcagtaactaaacctgtaacagctgcagtaactaagcccgta
acagctgcagtaactaaacctgtaacagctgcagtaactaagcccgtaacagcagcggta
actaaacctgttatgcatacagcggccgcagctaaaccagcgccagtcactgttgaagca
acccttgccgtgactccaacagcgaaagcgtcagctgaacgtgtaaagattgaaactaaa
cctgtaacagcagcagtcactaaacctgttatgcatacagcagccgcagctaaaccagcg
ccagtcactgttgaagcaacccttgctgttacaccaacagcgaaagcgtcagctgagcgt
gtaaagattgaaactaaatctgtaacgcgtaaaatgcacacagcaccagcaactcgtcca
ggtgccgcaccagttgttgttgaaacacctgttgttgctgaaacacctgttgttgctgaa
acacctgttgttgctgaaacacctgttgttgctgaaacacctgttgttgctgaaacacct
gttgttgctgaaacacctgttgttgctgaaacacctgttgttgttgaaacacctgttgtt
gctgaaacacctgttgttgttgaaacacctgttgttgctgaaacacctgttgttgctgaa
acacctgttgttgctgaaacacctgttgttgctgaaacacctgttgttgctgaaacacct
gttgttgctgaaacacctgttgttgttgaaacacctgttgtttctgaaacacctgttgtt
gttgttgaaacacctgttgcttatcaggctattgaagttacttcagtgcctgcactgcaa
gcacaaggtacaacatcaaagaagactaacttcactgttaagatggcgacacctcaacaa
gtagcaccttcacaacaccactttgttccaaaagttggtgtcgttcaacgaccattgatt
gatgtggcagctggaccaggtggcagtcaatttgcttcttcacaaagcacatcgccaacc
aaattagctaaataa
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