Moritella sp. 36: HWV03_20560
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Entry
HWV03_20560 CDS
T08847
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
moq
Moritella sp. 36
Pathway
moq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
moq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HWV03_20560 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
moq03021
]
HWV03_20560 (rpoD)
Transcription machinery [BR:
moq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HWV03_20560 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
TMPIT
DinB_2
Motif
Other DBs
NCBI-ProteinID:
QUM91011
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All DBs
Position
4627025..4628854
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AA seq
609 aa
AA seq
DB search
MESPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDIVDSDQVEDIIQMINDMGIQVLETAPD
ADDLLMAENTTAPDDDAAEAAAAALASVESEIGRTTDPVRMYMREMGTVELLTREGEIKI
AKRIEEGIYAVQTAVAEYPEAINSLLAEYDKFLAEETRLSDIITGFIDPNAEDVAPTATH
IGSEVPTKETDSDDADDDEDEEEGNKGPDPEEAAEKFAELRKYHAALLKGIKEDGLEHPK
TRLHVEMLSEVFRTFRLIPKQFDRIVNSMRDMMDHVRVQERLVIKMCVEQCKMPKAAFVE
AFAGHETDITWFEKAQQSAAPYAQALQRIDFDVRRCVNKLKLVESTTGLSISQIKNINRR
MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREATPEELA
ERMMMPEDRIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLSLPVDAATKDSLKGAT
DDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
EQLRSFLDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggaatcccctcaatcacaattaaaacttcttgtagctaaaggtaaagaacaaggttac
ctaacatatgcagaagtaaatgatcacttaccacaagatattgtggactcagatcaggtt
gaagatattattcaaatgatcaatgacatgggtattcaagtgctagaaacagcacctgat
gcagatgatttgttgatggccgaaaatacaacggcgccagatgatgatgccgcagaagct
gcagctgcagcgcttgcttctgtagaatctgaaattggccgaactaccgatcctgtacgt
atgtacatgcgtgagatgggtaccgttgaattattgactcgtgaaggcgagatcaaaatt
gccaaacgaattgaagaaggtatctatgcggtacaaactgccgttgcagaatacccagaa
gcaattaactcgttattagctgaatatgacaagttccttgctgaagaaacacgtttaagt
gacatcatcactggtttcatcgatccgaatgcagaagatgtggcaccaacagcaacacat
attggttctgaagttccaaccaaagaaactgattctgatgatgctgatgatgacgaagat
gaggaagaaggtaataaaggcccggatccagaagaagcagctgagaaatttgccgagtta
cgcaaatatcatgcagcattactgaaaggcattaaagaagacgggttagaacatccgaaa
acacgcctacacgttgaaatgctaagtgaagtattccgtactttccgtctgatcccaaaa
cagtttgatcgcattgtaaatagcatgcgtgacatgatggatcacgtacgtgttcaagaa
cgtcttgtcatcaagatgtgtgttgaacaatgcaaaatgccaaaagcagcattcgttgaa
gcattcgctggccacgaaactgacattacttggtttgaaaaagcacagcaatcagcagca
ccttatgcgcaagcattacaacgtatcgactttgacgtacgccgctgtgtcaacaaatta
aaattagtagaaagtactactggtctgtctatttcacagatcaaaaacatcaaccgtcgt
atgagtattggtgaagcgaaagctcgtcgtgcgaaaaaagaaatggttgaagcgaattta
cgtctggtaatttcgatagcaaaaaaatacaccaaccgtggtctacagttcctcgattta
attcaggaaggtaacatcggtctgatgaaagctgtagataaatttgaataccgtcgtggt
tacaaattctcgacttacgctacatggtggatccgtcaggcaatcacacgttctattgct
gaccaagcgcgtacaatccgtattccagtgcatatgattgaaacaatcaataaactgaat
cgtatttcacgtcaaatgctgcaagagatgggccgtgaagcaacgccagaagaattggcc
gagcgcatgatgatgccagaagatcgtattcgtaaagtattgaagattgctaaagagcca
atctcaatggaaacgcctattggtgatgatgaagattctcacttaggtgatttcattgaa
gatacaacgctttctttaccagttgacgctgcaacaaaagatagtcttaaaggcgcgaca
gacgacgttttagcaggcctaacagcccgtgaagctaaagtactgcgtatgcgttttggt
atcgatatgaatacagaccacacacttgaagaagtgggtaaacagttcgatgtaacgcgt
gagcgtattcgtcaaattgaagcaaaggcattacgtaaattacgtcatcctagccgtagc
gaacaactacgtagcttcttagacgaataa
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