Methylobacterium oryzae: MOC_0662
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Entry
MOC_0662 CDS
T03299
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mor
Methylobacterium oryzae
Brite
KEGG Orthology (KO) [BR:
mor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mor03016
]
MOC_0662 (rnd)
Enzymes [BR:
mor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MOC_0662 (rnd)
Transfer RNA biogenesis [BR:
mor03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MOC_0662 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AIQ88417
UniProt:
A0A089NM42
LinkDB
All DBs
Position
663374..664561
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AA seq
395 aa
AA seq
DB search
MDLITTTDALRQICTRLAEQPFVTVDTEFMRETTYYPKLCLIQMAAPDGTGVLVDPLAPG
IDLEPFIALMADERTVKVFHSARQDLEIIWLIGGILPHPFFDTQVAAMVCGYGDSVSYEQ
LVNDVAKAKIDKSSRFTDWSRRPLSEAQLSYALSDVTHLVKIYEVLVAELLRTDRGAWLD
EEMAVLTSPETYRADPAQAWRRLSGRMRKPREIAVLMEVAAWRESEAQARNVPRGRILKD
EAVIDIASAAPRNAEALGRLRTIPAGFERSRTGADIVAAVERGLARDTSAVRMPERVRRS
GGNGAIVELLKVLLKAVCETEGVAPKIIATVDDLEAIADDDTAEVPALQGWRRTLFGDKA
LALKQGRLALSVEAGRIVVRPPQGDTAPDGVERAG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggacctgatcaccaccactgacgcgctgcgccagatctgcacacgtctcgccgagcaa
cccttcgtgaccgtcgacacggagttcatgcgcgagacgacgtactatccgaaactctgc
ctgatccagatggcggccccggacggcacaggcgtcctggtcgatccgctggcgccgggg
atcgacctcgaacccttcatcgcgctcatggccgacgagcgtacggtcaaggtgttccac
tccgcccgtcaggatctggagatcatctggctgatcggcgggatcctgccgcatccgttc
ttcgatacgcaggtcgccgccatggtctgcggctacggcgattccgtctcgtacgagcag
ctcgtcaacgacgtcgccaaggccaagatcgacaagtcttcgcggttcaccgactggtcg
cggcgaccgctctccgaggcgcagttgagctacgcgctgtcggacgtcacccacctcgtg
aagatctacgaggtcctcgtggccgagctgctgcgcaccgaccggggcgcgtggctcgac
gaggaaatggcggtgctgacctcgcccgagacgtaccgtgccgatcccgcccaggcgtgg
cggcggctctccgggcggatgcgcaagccgcgggaaatcgccgtgctgatggaagtggcc
gcgtggcgcgagagcgaggcgcaggcgcgcaacgttccgcgcgggcggatcctgaaggac
gaagcggtcatcgatatcgcatccgcggcgcctcggaacgccgaggcgctcggccggctt
cggacgatcccggcgggattcgagcgttcccggaccggggccgacatcgtcgctgccgtg
gagcgtggcctcgctcgcgacaccagcgccgtccggatgcccgagcgggtgcggcggagc
gggggcaacggggccatcgtcgagttgctgaaggtgctgctcaaagcggtctgcgagacg
gagggcgtcgcgcccaagatcatcgcgacggtcgacgacctggaggcgatcgccgatgac
gataccgccgaggttccggccctccagggctggcggcggaccctgttcggggacaaagcc
ctggctctgaagcagggacgtctggcgctctccgtcgaggccggccgcatcgtggtgcgc
ccgccccagggtgacaccgcgccggacggcgtcgagcgggccggatga
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