Methylobacterium oryzae: MOC_4355
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Entry
MOC_4355 CDS
T03299
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mor
Methylobacterium oryzae
Pathway
mor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MOC_4355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mor03019
]
MOC_4355
Enzymes [BR:
mor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MOC_4355
Messenger RNA biogenesis [BR:
mor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MOC_4355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AIQ92110
UniProt:
A0A089NZZ7
LinkDB
All DBs
Position
4368357..4369907
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AA seq
516 aa
AA seq
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MTQFTDFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPI
LHRLSLSDRRAPRRGCRVLVLSPTRELANQIAESFSDYGRHLSFTNTVVFGGVTISRQER
ALAPGVDILVATPGRLIDLIERRSLILDGVEILVLDEADQMLDLGFIHALKRIVKMLPEK
RQSLFFSATMPKNIAGLAAQYLTDPVQVAVTPVATTAERVDQQVIFVHTGAKQALLGHIL
RDPAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALASFKDGSCRVLV
ATDIAARGIDVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRDI
ERVTRQKVPVAGFPEGFTPPSRQEAAEIAREEERRPERQQQRPGGGRQGQRPRQSQGRPQ
QGRPEGGRGFGGPGQGAPRQGRPQEGRADARGDGRGHAPQGRDVRADRPARPQGERPNQG
RPNRDARPQRADARPRSGGGGGEGRSIGWLERAPRS
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaattcaccgatttcggcctcgcccagcccgtgctgcgggcgctcagcgaggcc
ggctacgtcgcgccgaccccgatccaggcccaggcgatcccgcccgccatggaaggccgc
gacctctgcggcatcgcccagaccggcaccggcaagaccgcggccttcgcgctgccgatc
ctgcaccgcctctcgctctcggaccgccgcgcgccgcgccgcggctgccgggtgctggtg
ctctcgcccacccgcgagctcgccaaccagatcgccgaatccttctcggattacggccgt
cacctgtccttcaccaacacggtggtgttcggcggcgtcaccatcagccggcaggagcgc
gccctggcgccgggcgtcgacatcctcgtcgccacccccggccggctgatcgacctgatc
gagcgtcgctcactgatcctcgacggcgtggagatcctcgtcctcgacgaagccgatcag
atgctcgacctcggcttcatccacgccctcaagcgcatcgtgaagatgctgcccgagaag
cgccagagcctgttcttctcggcgaccatgccgaagaatatcgccggcctcgcggcgcag
tatctcaccgatccggtccaggtcgcggtgacgcccgtcgccaccacggcggagcgggtc
gaccagcaggtgatcttcgtccacaccggcgccaagcaggcgctgctcggccacatcctg
cgcgatccggcgatcgaacgcgtcctggtcttcacccgcaccaagcacggcgccgaccgc
gtcgtccgcgggctcgacaaggtcggcatcgcggcggcggccatccacggcaacaagagc
cagccgcagcgcgagcgggcgctggcgtccttcaaggacggctcctgccgggttctggtc
gccaccgacatcgcggcccgcggcatcgacgtcgagggcgtgagccacgtggtcaatttc
gacctgccgaacgtgccggagagctacgtccaccggatcggccgcaccgcccgggccggc
gcggacgggctcgccatctcgttctgcaacgacgaggagaaggcctacctgcgcgacatc
gagcgggtgacccggcagaaggtgccggtggcgggcttccccgagggcttcaccccgccg
tcccgccaggaggcggccgagatcgcccgcgaggaggagcgccggcccgaacggcagcag
cagcgtcccggcggcggccgccagggtcagcggccccggcagtcgcagggccgtccccag
cagggtcggccggagggtggccgcggcttcggcggtcccggccagggtgcgccccggcag
ggccggccccaggagggccgggccgacgcccgcggcgacgggcggggtcatgccccgcag
ggccgcgacgtccgcgccgaccggccggcacgaccgcagggcgagcgccccaaccagggc
cgtccgaaccgcgacgcccggccccagcgggccgatgcccggccgcgcagcggcgggggc
ggcggcgagggtcgcagcatcggctggctggagcgggcgccccgctcctga
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