Methylobacterium oryzae: MOC_4383
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Entry
MOC_4383 CDS
T03299
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mor
Methylobacterium oryzae
Pathway
mor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MOC_4383 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mor03021
]
MOC_4383 (rpoB)
03400 DNA repair and recombination proteins [BR:
mor03400
]
MOC_4383 (rpoB)
Enzymes [BR:
mor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MOC_4383 (rpoB)
Transcription machinery [BR:
mor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MOC_4383 (rpoB)
DNA repair and recombination proteins [BR:
mor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MOC_4383 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RelB
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
AIQ92138
UniProt:
A0A089P251
LinkDB
All DBs
Position
complement(4399350..4403474)
Genome browser
AA seq
1374 aa
AA seq
DB search
MANTLVGRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLMVDEPEGGRADEGLQSVFKSV
FPISDFASTALLEFVRYTFEAPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTQAKSV
KDIKEQDVYMGDMPLMTENGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDVEFDAKDIVHVRIDRKRKLPATSLLYALGLDGEEILSTFYNKVVYDRDG
ADWRVPFDAERMKGMKATVDLIDADSGEVVLEAGKKLNARNARQITDKGTKFLKATDEDL
VGQYVAEDLVNAQTGEIWAEAGEEITDKLLKSLDDVGITELPVLDIDHVNVGPYIRNTLA
VDKNSNREGALFDIYRVMRPGEPPTLETAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLD
AADTVRTLRKEDMLAVVKALVELRDGKGEVDDIDHLGNRRVRSVGELMENQYRLGLLRME
RAIRERMSQVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPFR
RVRDGVVTDEVAYLSAMEEAKYYVAQANAQMDEARKLTEDLVVCRRAGEVIVVGPERVDL
MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVARDS
GAAIAARRAGIIDQVDATRIVIRATEEADANKPGVDIYRLQKFQRSNQSTCITQKPLVRV
GEFVKKGEIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSIHI
EEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVNAGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIEREEI
ERLAKDRDDEQAILDRNTYARLADVLIGQAPVAGPKGFKKDTTLTRELINDYPRSQWWQF
AVIDDRLMTEMEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWA
AAGLGRKVSKAVDAYLKSQDIAPLREEMKAIYSPGELDGLTDEELAEAGNNVRRGVPMAT
PVFNGAKEADIEQMLEMAGLDRSAQSTLYDGRTGEPFDRKVTMGYIYMLKLHHLVDDKIH
ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV
YEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTSSKKAANDQLEPPADAAE
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggccaacacgctggtcggtcgcaagcgcattcggaagttcttcggcaagatcaaggaa
gttgccgagatgccgaacctcatcgaggttcagaaggcgtcctacgaccagttcctgatg
gtcgacgagcccgagggtgggcgcgccgacgaggggctgcagagcgtgttcaagtcggtc
ttcccgatttccgacttcgcttccacggccctgctcgagttcgtgcgctacaccttcgag
gcgcccaagtacgatgtcgacgagtgccgccagcgcggcatcaccttcgcggccccgctg
aaggtcacgctgcgcctcatcgtgttcgatgtcgatcccgacacgcaggcgaagtcggtc
aaggacatcaaggagcaggacgtctacatgggcgacatgcccctgatgacggagaacggc
accttcatcgtcaacggcaccgagcgcgtgatcgtctcgcagatgcaccgctcgccgggc
gtgttcttcgaccacgacaagggcaagacccattcctcgggcaagctcctgttcgccgcc
cgcatcatcccgtaccggggctcctggctcgacgtcgagttcgacgccaaggacatcgtc
cacgtccgcatcgaccggaagcgcaagctgccggcgacgtcgctgctctatgccctcggc
ctcgacggcgaggagatcctgtcgaccttctacaacaaggtcgtctatgaccgcgacggc
gccgactggcgcgtgcccttcgacgccgagcgcatgaagggcatgaaggccaccgtcgac
ctgatcgacgccgattccggcgaggtcgtgctcgaggccggcaagaagctcaacgcccgc
aacgcccgtcagatcaccgacaagggcaccaagttcctcaaggccaccgacgaggatctc
gtcggccagtacgtggccgaggatctcgtcaacgcgcagaccggcgagatctgggccgag
gccggcgaggagatcaccgacaagctcctgaagagcctggatgatgtcggcatcaccgag
ctcccggtgctcgacatcgaccacgtcaatgtcggcccctacattcgcaacacgctggcg
gtggacaagaactccaaccgcgagggcgcgctgttcgacatctaccgggtcatgcgcccg
ggcgagccgccgaccctcgagaccgccgaggcgatgttccactcgctgttcttcgactcc
gagcggtacgacctctcggccgtcggccgcgtgaagatgaacatgcgcctcgacctcgac
gccgccgacaccgtgcgcaccctccgcaaggaggacatgctcgcggtggtgaaggcgctc
gtggagctgcgcgacggcaagggcgaggtcgacgacatcgatcacctcggcaaccgccgc
gtccgctcggtgggcgagctcatggagaaccagtaccgcctgggccttctgcgcatggag
cgcgccatccgcgagcgcatgagccaggtcgatatcgacacggtcatgccgcaggatctg
atcaacgcgaagcccgcggcggcggcggtgcgcgagttcttcggctcgtcgcagctctcg
cagttcatggaccagaccaacccgctctcagaggtgacgcacaagcgccgcctgtcggcc
ctcggcccgggcggtctgacccgcgagcgcgccggcttcgaggtgcgcgacgtgcacccg
acccattacggccgcatctgcccgatcgagacgccggaaggccccaacatcggtctgatc
aactcgctcgcgaccttcgcgcgggtgaacaagtacggcttcatcgagaccccgttccgc
cgcgtgcgcgacggcgtggtcaccgacgaggttgcctacctctccgccatggaggaggcg
aagtactacgtcgcccaggcgaacgcccagatggacgaggcccgcaagctcacggaggat
ctcgtggtctgccgccgggccggcgaggtgatcgtcgttgggcctgagcgcgtcgacctc
atggacgtgtcgcccaagcagctggtctcggtcgccgcggcgctgatcccgttcctggag
aacgacgacgccaaccgcgccctcatgggctcgaacatgcagcggcaagcggtgccgctg
gtccgcgccgacgccccgttcgtgggcaccggcatggaggcggtggtcgcccgggattcc
ggcgccgccatcgcggcccgccgggccggcatcatcgatcaggtggacgccacccgtatc
gtcatccgcgccaccgaggaggccgacgccaacaagcctggcgtcgacatctaccgcctg
cagaagttccagcgctccaaccagtcgacctgcatcacgcagaagccgctggtccgcgtc
ggcgagttcgtgaagaagggcgagatcatcgccgacggtccctcgaccgagttcggcgag
ctggcgctcggccggaacgtgctcgtcgcgttcatgccgtggaacggctacaacttcgag
gactcgatcctgctctccgagcggatcgtgaaggatgacgtgttcacctcgatccacatc
gaggagttcgaggtgatggcccgcgacaccaagctcgggccggaggaaatcacccgcgac
atcccgaacgtctccgaggaggcgctcaagaacctcgacgaggccggcatcgtctatatc
ggtgccgaggtgaatgccggcgacatcctggtcggcaagatcaccccgaagggcgagagc
ccgatgacgccggaggagaagctgctccgcgccatcttcggcgagaaggcctcggacgtg
cgcgacacctccctgcgggtgccgccgggcgtcaccggcacgatcgtggaagtccgcgtg
ttcaaccgccacggcgtcgacaaggacgagcgcgcccaggcgatcgagcgcgaggagatc
gagcggctcgccaaggaccgcgacgacgagcaggcgatcctcgaccgcaacacctacgcc
cgtctggcggatgtgctgatcggtcaggcgccggtggccggcccgaagggcttcaagaag
gacaccacgctcacccgcgagctgatcaacgactatccgcgctcgcaatggtggcagttc
gccgtcatcgacgaccgtctcatgaccgagatggaggcgatgcagaagcagtacgacgag
tcgaagaagcgcctggagcagcgcttcctcgacaaggtcgagaagctgcagcgcggtgac
gagctgccccccggcgtcatgaagatggtcaaggtcttcgtggcggtgaagcgcaagatc
cagccgggcgacaagatggccggccgtcacggcaacaagggtgtcgtgtcgcggatcgtg
ccgatcgaggacatgccgttcctggaggacgggacgcatgccgacatcgtgctcaacccg
ctgggcgtgccctcgcgcatgaacgtcggccagatcctcgagacgcacctgggctgggcg
gctgcgggcctgggtcgcaaggtgtcgaaggcggtggatgcctatctgaagtcgcaggac
atcgcgccgctgcgggaggagatgaaggcgatctactccccgggcgagctcgacgggctg
acggacgaggagctggccgaggccggcaacaacgtccgccgtggcgtgccgatggccacg
ccggtgttcaacggcgccaaggaagccgacatcgagcagatgctggagatggccgggctg
gaccgctcggcgcagtcgacgctctacgacgggcggaccggcgagcccttcgaccgcaag
gtcacgatgggctacatctacatgctgaagctccaccacctcgtggacgacaagatccac
gcgcgctcgatcggcccgtactcgctcgtcacccagcagccgctgggcggcaaggcgcag
ttcggcggccagcgcttcggtgagatggaggtctgggcgctggaggcctacggcgcggcc
tacacgctgcaggagatgctcacggtgaagtcggacgacgtggccggccgcaccaaggtc
tacgaggcgatcgtccgcggcgacgacaccttcgaggccggcatccccgagagcttcaac
gtgctcgtcaaggagatgcgctcgctcggcctcaacgtcgagctgacgtcttcgaagaag
gccgcgaacgatcagctggagccgccggccgacgcggccgagtag
DBGET
integrated database retrieval system
