Methylobacterium oryzae: MOC_5058
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Entry
MOC_5058 CDS
T03299
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mor
Methylobacterium oryzae
Pathway
mor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MOC_5058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mor03400
]
MOC_5058
Enzymes [BR:
mor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MOC_5058
DNA repair and recombination proteins [BR:
mor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MOC_5058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
UB2H
AAA_30
RecG_dom3_C
DUF1663
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIQ92813
UniProt:
A0A089P450
LinkDB
All DBs
Position
5063378..5066671
Genome browser
AA seq
1097 aa
AA seq
DB search
MAKRRTKAGAHQGLEDAPLMPTGALAVALLAYAEGPGPVVHVARDARRLEDLAATLRALD
PDAQVAIYPEWDCLPFDHASPSRAMMGARAAVLRWLTDREALPDFVLTTAPALVQRVPPP
ETWASARVTLRVGDPLDVAAATADLKRLGYILDERVDEPGEIAVRGRTVEVFPAAAPRPC
RIEHAEGRVTAIRSYDPISQRSVAEADELVIDPATEIILEPGSGQSFEPFTGQEHRLDRY
YPRLVTLLDYVPGARLAVEDGTQARVDAFFEQMDEARGRLTARDAQGQPGAALYLTPEAW
RAIVAAHGRLAVTEAAGEPRAMPTFAGERRPGTAFAKVLRERLKAGDVVVLAGSVRPLRR
LVRQAGKIAERPIRLIDAWADVAEAAPGDVLALEAPLAAGFRVPEQGATVIAAADLFGPE
AAVTGGARAILPMGEVDLRPGDVAVDRDHGLCVFEGLEAVTTRGEEPSEALRLRFSGDAI
LMVPVTQADRIWRYGPEPDAVTLDKLDGGTWPRRRLEAEATMARTARLMLEAARARRETE
APVLSPPARDMERFAAGFGFAPTPDQAAAVDALMADLASGRPMDRLVCGDVGFGKTEVAL
RALAAAIFSGRQAALIAPTTVLARQHAETLRRRFGRFGVEVAQLSRLVAPAEAKRVKAGL
ADGTIRLVVGTHALAGSGVSFADLGLTVIDEEQRFGAKMKADLRRLADGGHVLTLTATPI
PRTLQAALVGLQSLSVLATPPALRQPVRTVVAPFDAEAVREALIREHRRGGQSFVVCPRI
EDIGPMAERLRALVPGLDILVAHGDLKPSAMDEVMVRFADGDGDVLLATAIVESGLDVPR
ANTMLVWEAARFGLAQLHQLRGRVGRGQRRGTVHLLSDPAAPPPAAALQRLRALEALDRL
GAGFAVSARDLDLRGAGDLVGEDQAGHAKLVGLGLYQHLLQLALTAAKGERAEDWSPEIE
LGLPSRIPEDYVPEPEIRLSLYTRLLRLQDPEAIEALAGEVEDRFGAAPAPVLALFDLAR
LRASCCALGVARLRGGPQGVAADLRPDRPLPAMAAEADVILREGRVVWKRPCPDSAGCAA
LAADLLERIRAARERAG
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgcaggacgaaggcgggcgcccatcagggcttggaggacgcgccgctgatg
cccaccggcgccctggcggtggcgctcctggcctatgccgagggcccgggtccggtggtg
catgtcgcccgggatgcccgccgcctcgaggacctcgccgcgaccctccgggcgctggat
cccgacgcgcaggtcgcgatctatcccgaatgggactgcctgcccttcgaccacgcctcg
ccgtcgcgggccatgatgggcgcccgggccgcggtgctgcgctggctgaccgaccgggag
gcgctgccggatttcgtgctgaccaccgcccccgccctcgtgcagcgcgtgccgccgccg
gagacctgggcctcggcccgcgtgaccctgcgggtcggcgaccccctcgacgtcgccgcc
gcgaccgccgacctgaagcgcctcggctacatcctcgacgaacgggtcgacgagcccggc
gagatcgccgtccgcggccgcaccgtcgaggtgttccccgccgccgcgccgcggccctgc
cggatcgagcacgcggaggggcgcgtcacggcgatccgatcctacgacccgatctcgcag
cgctcggtggccgaggcggacgaactcgtgatcgatcccgccaccgagatcatcctggag
cccggatccggccagagcttcgagcccttcaccggccaggagcatcgcctggaccgctat
tacccccgcctcgtcaccctcttggactacgtgcccggcgcgcgcctcgcggtcgaggac
ggcacgcaggcccgggtcgacgccttcttcgagcagatggacgaggcgcggggccggctg
accgcccgcgacgcgcaggggcagcccggcgccgccctctatctgacgccggaggcgtgg
cgcgccatcgtggcggcgcacggccggcttgccgtcaccgaggcggccggggagccccgg
gccatgccgaccttcgccggcgagcgccggccgggaacggccttcgccaaggtcctgcgc
gagcggctgaaggccggcgacgtcgtcgtgctcgccggttcggtccggccgctccggcgc
ctcgtgcgccaggcgggcaagatcgccgagcgcccgatccggctgatcgacgcctgggcc
gacgtcgccgaggcggcacccggcgacgtcctcgccctggaggcgccgctggcggccggc
ttccgggtgcccgagcagggcgcgaccgtgatcgccgccgccgacctgttcggcccggag
gccgccgtcacggggggcgcccgggcgatcctgcccatgggcgaggtcgacctgcgcccc
ggcgacgtggccgtcgaccgggatcacggcctgtgcgtgttcgaggggctggaggcggtg
acgacccggggcgaggagccctccgaggccctgcgcctgcgcttttccggcgacgcgatc
ctgatggtgccggtgacccaggccgaccggatctggcgctacggtccggagcccgacgcc
gtcaccctcgacaagctcgacggcggcacgtggccccggcgccgcctggaggccgaggcc
accatggcgcggaccgcccgcctgatgctggaggccgcccgcgcccgccgggagacggag
gcgccggtcctgtcgcccccggcccgggacatggagcggttcgccgcgggcttcggcttc
gcgccgacgcccgatcaggcggctgcggtcgatgcgctgatggccgacctcgcctccggc
cggccgatggaccggctggtctgcggcgatgtcggcttcggcaagaccgaggtggcgctc
cgggcgctcgcggccgcgatcttctccggccggcaggcggcgctgatcgccccgaccacc
gtgctggcccgccagcatgccgagaccctgcgccgccgcttcgggcggttcggcgtggag
gtggcgcagctctcgcgcctcgtggcgccggccgaggccaagcgcgtcaaggcggggctc
gccgacggcacgatccggctcgtggtcggcacccacgcgctcgccggcagcggggtgtcc
ttcgcggatctcggcctgaccgtgatcgacgaggagcagcgcttcggcgcgaagatgaag
gccgacctgcgccgcctcgcggatggcggccacgtcctgacgctcaccgcgaccccgatc
ccgcgcacgctccaggcggcgctcgtcggcctccagagcctcagcgtgctggccacgccg
ccggcgttgcgccagccggtccggaccgtggtggcgcccttcgacgccgaggcggtccgc
gaggcgctcatccgcgagcaccgccggggcggccagagcttcgtggtctgcccgcggatc
gaggatatcggccccatggccgagcggctgcgcgccctcgtgccgggcctcgacatcctg
gtggcgcacggggatctcaagccctccgccatggacgaggtcatggtccgcttcgcggat
ggcgacggcgacgtcctgctcgccaccgccatcgtggagagcggtctcgacgtgccccgg
gccaacaccatgctggtctgggaggccgcccggttcgggctggcgcagctccaccagctc
cggggccgcgtcggccgcggccagcggcgcggcacggtccatctgctgagcgacccggca
gcgccgcccccggcggcggcgctccagcgcctgcgggccctggaggccctggaccgcctc
ggcgccggcttcgcggtcagcgcccgggacctcgatctgcgcggcgccggcgacctcgtc
ggcgaggatcaggcgggtcacgccaagctcgtcgggctcggcctctaccagcacctgctg
cagctggcgctcaccgccgccaagggcgagcgcgccgaggattggagccccgagatcgaa
ctcggtctgccgagccgcattcccgaggattacgtccccgagcccgagatccgcctcagc
ctctacacgcgcctcctgcgcctgcaggatcccgaggcgatcgaggcgttggccggcgag
gtcgaggaccggttcggcgcggcccccgcgccggtgctcgccctgttcgacctcgcgcgg
ctgcgcgcatcctgctgcgcgctgggcgtcgcccggctccggggcggcccgcagggcgtc
gcggccgatctgcggccggaccggccgctgcccgcgatggccgccgaggcggacgtcatc
ctgcgcgagggacgggtggtgtggaagcggccctgcccggattccgccgggtgcgcggcg
ttggcggccgacctcctggagcgcatccgcgccgcccgggagcgcgccggctga
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