Marasmius oreades (fairy-ring mushroom): 66078143
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Entry
66078143 CDS
T08156
Symbol
CLP1
Name
(RefSeq) Cleavage polyadenylation factor subunit clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
more
Marasmius oreades (fairy-ring mushroom)
Pathway
more03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
more00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
66078143 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
more03019
]
66078143 (CLP1)
Enzymes [BR:
more01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
66078143 (CLP1)
Messenger RNA biogenesis [BR:
more03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
66078143 (CLP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_N
CLP1_P
Clp1
nSTAND3
ATP_bind_1
AAA_24
Motif
Other DBs
NCBI-GeneID:
66078143
NCBI-ProteinID:
XP_043009209
UniProt:
A0A9P7RZM5
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All DBs
Position
5:2785136..>2787232
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AA seq
489 aa
AA seq
DB search
MPEESESSPSKEWVLEPETEYRFELDLGTSLAIKLLRGNAEIFGAEMVEGKAYLFGQECK
AAVFTWVGCTIQVTGQPSTEYVSEETPMTAYGNLHIALEQMRVRALAKFRGSPEPEARST
DAPAEPPRVLVLGPENAGKTTLCKILINYAVRAGQAWSPLLVNVDPGEATSAAPGALSAT
SVYSPLPTCSPSFPLGSAATSAPTSLGSNALLPVLYWYGHSSTTRNSLLMDRLIRNLGFN
IDNKSSNDPKGQLAGIIVDTPSSFASGTAATNEQRQRLIKACIDAFKINIILVVGHEKLN
VEMQRAYSSKLKVVKVPKSGGVVELDHGYRERIINYQFHGYMYGEVIRPPPGITSGTQGG
EALTDLTLSPSSTVVNFSDLKIYRIGAATMAPSSALPIGATRSVSEMQPVLVEPSLPGSG
LLNAILAVLSPFNPDENERYDEEILDLSVIGFIAVTHIDIPHQKLTVLSPAQGSLVGKTA
IIGSYEWQE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagaatccgagtcttcaccaagcaaagaatgggtccttgaaccagaaactgaa
tacagatttgaactcgatttagggacatctctcgcaatcaagttgttgcggggaaatgca
gagatttttggcgcggaaatggtcgagggcaaagcttatcttttcggtcaagagtgcaaa
gcagcagtcttcacttgggtcgggtgcactatccaggtaaccggtcaaccatcgactgaa
tatgtgtcggaagaaaccccaatgacggcctatggcaacctgcatatagctttggagcaa
atgcgtgttcgcgcccttgcgaaattccgtggatcaccagaaccggaagccagatcaacc
gacgctcccgcagaaccacccagagtcttggttctgggccccgaaaatgctggtaaaacc
acgctgtgtaagattctgattaactatgcagtgcgcgctgggcaggcgtggtctccactt
cttgtgaatgtagaccctggcgaggcaacatcggcagcgccgggtgccctctcagcaact
tctgtgtacagcccccttccgacctgttctccatcattcccactgggctccgctgctacc
tccgcaccgacaagcctgggatccaatgcccttcttcctgttttgtactggtatggccac
tcaagtactacccggaattccctgttgatggatagactcatccgaaatctcgggttcaac
atcgataacaagtcatccaatgatcctaaaggccagttagccggaataatcgttgacaca
ccgtcttcgtttgcatcagggactgctgcaacgaacgaacagcgacagaggctcatcaaa
gcgtgtatagatgccttcaaaatcaatatcattcttgtagtgggacacgagaaactcaat
gtagagatgcagcgtgcttactcatccaagctcaaagtggttaaagtcccgaaatctggc
ggagttgtcgagttggaccatggttaccgagagcgaattatcaattaccagtttcacggt
tacatgtatggcgaggtcatccggccaccgccagggattacatctgggacgcagggggga
gaggctcttaccgacctcactttgtccccttcgtcaacggtggtcaactttagcgacttg
aagatatatcgcatcggggctgccacgatggccccttcctcagcactgcccatcggtgca
actcgtagtgtttcagaaatgcaaccggttctcgtcgaaccttcactacccggatcaggc
ttactgaacgcgattctcgctgttctttctccgtttaatcccgacgaaaatgaacggtat
gacgaagagattctggatctctcagttattggtttcatcgccgtaactcatatcgatata
cctcatcaaaaattgaccgttctttctccagctcaaggatcattggttggaaagacggcc
atcattggctcgtatgaatggcaggaatag
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