Marasmius oreades (fairy-ring mushroom): 66078329 Help Entry 66078329          CDS       T08156                                  Name (RefSeq) uncharacterized protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism more  Marasmius oreades (fairy-ring mushroom) Pathway more03013   Nucleocytoplasmic transport more03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:more00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     66078329    03015 mRNA surveillance pathway     66078329  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:more03019]     66078329 Enzymes [BR:more01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      66078329     5.6.2.5  RNA 5'-3' helicase      66078329 Messenger RNA biogenesis [BR:more03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      66078329    mRNA cycle factors     Common to processing body (P body) and stress granule      66078329 SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase Viral_helicase1 NPHP3_N NAT10_TcmA_helicase DEAD PIF1 AAA_22 nSTAND3 PhoH zf-C2H2_AHC1 AAA_10 SRP54 Ribosomal_S13_N Ribosomal_S27e ATPase AAA_16 Mg_chelatase Motif Other DBs NCBI-GeneID:  66078329 NCBI-ProteinID:  XP_043009421 UniProt:  A0A9P7S035 LinkDB All DBs Position 5:complement(3348237..3352463) Genome browser AA seq 1098 aa AA seqDB search MESFDNFQFDAGSSYGGMGVVDDTSSVYTSTTQEQDQDQDQDNASSLDLSSLSLNGKDQS PTINGGVKQEDLDEDFDAVLDDLKDDGGQVDLPPHACSYCGIHSPASVVKCLICSKWFCN SRGNTSASHIVNHLVRAKHKEVILHADSPLGETAPECYNCGSKNVFMLGFIPAKSDTVVV LLCRQPCSAISKDISWNSALWAPLIDDRSFLSWLVKPPSETEQLRSRQISFDQINRLEEL WRENASATLEDLEKPGVDDEPHPILPRYEDAYQYQNIFGPLVKIEADYDKKLKESQTQTD ITVRWDVGLNQKRVAWFCLPKLESGEVRLAVGDELRLRYLGELHKPWDGVGHVIKIPNNV SDEVALELRRTDGVPFECTQNFAADFVWKSTSFDRMQLAMKTFAVNEKSVSGYIYHKLLG HELEPQTLRTQMPKRWSAPGLPELNHSQMFAVKSVLQKPISLIQGPPGTGKTVTSATIVY HLAKMNPDQVLVCAPSNVAVDQLTEKIHATSLKVVRLTAKSREALDSSVSFLTLHQQVSN ATHHVELQKLIQLKNEQGELSSNDERKYKTLIRQCEREILGAAEVICCTCVGAGDPRLSK LKFRTVLIDEATQAAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAARAGLTQSLFER LVLLGNRPIRLQVQYRMHPCLSEYPSNMFYEGSLQNGVTAPERLRKNVDFPWPVPDTPMF FYQNLGQEEISSSGTSFLNRTEANNVEKIVTKFFKSGVVPAQIGIVTPYEGQRSYIVNYM QFNGSLKKDLYKEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAK YGIVILGNPKVLSKHPLWHDLLTHYKSMECLVEGPLNNLQVSMIQFSKPRRSLAKAMDQF RRHETNARDFIPTRSSGTPSRFDASFYRTHDAVGYIPSDVQSLRSQATYSSGLPMFTANG PFSAQVPRGPGGVGGGKRQGGGSSAYGGSYASSIISQDPGPTQSVVGGERDMERASLISY NQSDRVTGRGVGGVGVGGGRMGGRGRRPSFGSSSVAGTSDVGSLSLGGSQYDYKSQGEDV DLDDVKSQYTGTHGVTVF NT seq 3297 nt NT seq  +upstreamnt  +downstreamnt atggaatcgttcgacaattttcaattcgacgctggctcttcgtacggtgggatgggcgta gtggacgatacgtcctccgtctacacctccacgactcaagaacaagaccaagaccaggac caagacaatgcatcttcattagacctctctagtctatctctcaacggcaaagatcaatcg cctacaattaatggtggcgtcaaacaagaggatctggacgaagactttgatgctgtttta gatgacctcaaggatgatggtggacaggtggatttgcctcctcatgcttgtagttactgc ggaattcattccccagcatccgtagtcaaatgcttgatttgcagcaaatggttctgcaat tctcgaggaaacacttccgcttcccacatcgtcaatcacctcgtgcgcgcaaagcataag gaagtcatcctacatgccgacagccctctcggagagacggctccagaatgctacaactgc ggaagtaagaatgtgttcatgcttggtttcatcccggcgaaaagtgatacagtcgttgtg ctgctttgtcgccaaccatgctcagccatatctaaagacatatcctggaactccgcttta tgggcgcccctcatcgatgaccgctcgttcctctcgtggcttgttaaacctccatccgaa accgaacaactccgcagtcgccaaatatccttcgaccaaataaatcgtctagaagaactc tggcgtgaaaatgcctctgctactctggaagacctcgagaagcctggggttgatgatgaa ccgcatccaatcttgccacgatacgaagacgcttaccaataccaaaacatatttggaccg ttggtgaaaattgaggccgattatgataaaaagctcaaggaaagtcagacgcagacggat atcacggttaggtgggacgtcgggctgaatcagaagagagttgcctggttctgtcttccc aagctggaaagtggtgaagttcggttggcagttggggatgagttgaggctgagatatttg ggagagttgcataagccctgggatggggttgggcatgttatcaagattcctaacaacgtt tcggatgaagttgcccttgagctgagaagaaccgacggagttccttttgagtgcacgcaa aattttgctgccgactttgtgtggaaatccactagcttcgataggatgcagctcgccatg aaaacatttgccgtcaacgagaagagtgttagtggttatatttatcataaactcctagga cacgagcttgagcctcagacactgcgcactcagatgcccaagcgttggtccgcacctggt cttccggaactcaaccactcccagatgttcgccgtgaagagcgtcctccaaaagcctatt agtttgattcagggtcctcccggcaccggaaagactgtcacatccgccaccatcgtctat cacctagcgaaaatgaatcccgaccaagtcctcgtttgcgctccttcaaatgtcgctgta gaccagctgaccgagaaaatccacgctacgagtttgaaagtcgtccgtttgacggcgaaa tctcgggaggctttagattcgagtgtgagcttcttaacgctgcatcaacaagtgtcgaat gctacccatcatgtggagttgcaaaagttgattcagctgaagaatgagcagggagaattg agtagtaatgatgagaggaagtataagaccctcatcaggcaatgtgaaagggagatcttg ggtgcagctgaggttatctgctgtacatgtgtgggagctggtgatccgaggttgagtaag ttgaaatttaggactgtgttgattgatgaagctacgcaggctgctgagccagaatgtatg attcctctcgttcttggatgtaaacaggtcgttctcgtcggtgatcatcaacaattagga cccgttatcatgaacaagaaagcggctcgggcgggtctaacgcaatcgctgttcgaacgt cttgttctcctcggaaaccgacccatccgattacaagttcagtataggatgcatccttgt ctgtcggagtacccgtcgaacatgttctatgaaggctccttgcagaatggtgttactgct ccggagaggttgaggaagaacgttgattttccatggcctgtacccgacactccgatgttt ttctatcagaatttgggtcaggaggagatttcgagcagtggaacgtcgtttttgaatagg acggaagccaataacgtcgaaaaaatcgtcaccaagttcttcaaatctggagttgtacct gcgcaaatcggtattgtcactccgtatgaaggtcaacgatcctatatcgtcaattacatg cagtttaatgggtcgctcaagaaggacctgtacaaggaagttgaagtcgcctctgttgat gcgttccaagggagggagaaggattatatcattctgagttgtgtgagaagtaatgagcat caggggatagggttcttgaatgatccaaggcggttgaatgtcgcgttgactagggcaaaa tacgggattgttatacttggtaacccgaaggtgctgagtaagcacccactatggcatgac cttctgacacactacaagtcgatggaatgtctcgttgaaggtcccttgaacaatctgcaa gtcagtatgatccagtttagcaagcctcgtcggtctttagcaaaagccatggaccaattc cggaggcatgaaacgaacgctagagatttcatccccacacgaagctcagggactccaagc cgattcgatgcgagcttctataggactcatgatgcggtgggatatatcccgagcgatgta cagtcgcttcgtagtcaagcgacatactcttcaggcttgccgatgtttactgcgaacgga cccttcagtgcacaggttcctcgtggtcctggcggtgtgggtggaggaaaacgacaagga ggtgggagtagtgcgtatggtggaagttatgcgagttcgattatttctcaagatcctggg cctactcagagtgttgttgggggtgagagggatatggaacgagcgagtttgatatcgtac aatcagagcgatcgggttactgggcgtggagtcggaggtgtgggtgtaggtggtggtagg atgggaggtagaggaaggagaccgtcatttgggtctagctctgttgcgggtacaagcgat gtgggcagtctgagcctcggaggctctcagtacgattacaagagtcaaggcgaagacgtt gatttggacgatgtcaagtcacagtatacggggacacatggtgttaccgttttctga

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