Marasmius oreades (fairy-ring mushroom): 66079189
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Entry
66079189 CDS
T08156
Symbol
YSH1
Name
(RefSeq) endoribonuclease ysh1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
more
Marasmius oreades (fairy-ring mushroom)
Pathway
more03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
more00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
66079189 (YSH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
more03021
]
66079189 (YSH1)
03019 Messenger RNA biogenesis [BR:
more03019
]
66079189 (YSH1)
Transcription machinery [BR:
more03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
66079189 (YSH1)
Messenger RNA biogenesis [BR:
more03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
66079189 (YSH1)
U7-dependent histone pre-mRNA processing factors
66079189 (YSH1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF6047
Motif
Other DBs
NCBI-GeneID:
66079189
NCBI-ProteinID:
XP_043007526
UniProt:
A0A9P7RXM8
LinkDB
All DBs
Position
6:2052855..2055893
Genome browser
AA seq
751 aa
AA seq
DB search
MSDTPTLSITLLGAGQEVGRSCCVLQYRGKTIVCDTGVHPAYSGMASLPFIDELDWSTVD
AILVTHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSSSSSDALF
SPLDMSMSLSLITPISAHQLITLCPGVTFTPYHAGHVLGACMFLIDIYGLRILYTGDYSR
EEDRHLVKAEVPPIRPDVLIVESTYGVQSLESRPEKELRFTALVHSIIRRGGHVLLPQFA
LGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKSMAVYQTYIHTMNSNVRTRFSKRDN
PFVFKHISNPAQARGWEKKISEGPPCVVLASPGFMQSGPSRELFELWAPDSRNGLIITGY
SIEGTMARDIMTEPDEFESVKGGTIPRKISVDYISFSAHVDYSQNSEFIELVKAQHIVLV
HGEQTAMGRLRAAMTSRYKEREEDVKIHTPRNCETLNLSFRGERVAKAIGTLADQSPQPN
DVLSGLLVAKDYSYTLLDPRDLKDFAGLSTCVVSQKQRITLGVGWELVRWHLEGMYGKVE
EGIDKDGAPTIRVMGAIDVKHTEEHELTLEWESSASVDMIADSTLALITGIDKSPASVKL
TNHSHSHSHKHPHADNENETSIVSKIGMFLEAHFGFESLEYHEPDLLENDTEQGEEERYP
AFVVTLPEGTASVNLNTLAVSSTNETLKKRLEAVVNMAVTTVSSLAQSFSVVAPASHEDM
NLDKDPTKAVLIPLEVEPNGVSPAEQRPSDG
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatacaccgaccttgagcataacattgttgggcgctggtcaagaagtgggaaga
tcatgctgcgtgttacagtatcgaggaaaaacaattgtttgcgacactggcgtgcaccca
gcgtacagtggaatggcctcacttcctttcatagatgaactcgactggagcacagttgat
gctatcttagtaactcactttcacctggatcatgcagctgctcttacatatatcactgaa
aagaccaacttcagggatgggaagggcaaggtctacatgacacatccaactaaagctctt
cataaattcatgatgcaggattttgtgcgcatgagttcttcatcttcagatgccctgttc
tcccctctggatatgtccatgtctctttcgttaatcactccaatctctgcccatcaactc
atcaccctttgccccggagtcaccttcacaccatatcatgcaggccacgttctcggtgct
tgcatgtttttgattgacatctacggtctgcgaatattatacactggtgactactcaagg
gaggaggatcgccaccttgtcaaagctgaagtaccgccaatacgtccagatgtcctcatt
gttgaaagtacttatggggtacagagcctggaaagtcggccggagaaagaactacgtttc
accgccttggttcactcgatcattcgtcggggaggtcacgttctgctaccacaattcgct
ctcggacgagctcaagaattattacttatcctggatgaatactggaagaaacacccagat
cttcataatgtgcccatctactatgcatcaagtctcgcccgcaaatccatggctgtgtat
caaacgtacatccacaccatgaattccaacgttcgaacaagattctcaaaacgagacaat
cctttcgtcttcaagcacatttcaaatcctgcacaagccagagggtgggaaaagaagata
tcagagggtcctccctgtgttgtgcttgcaagccccggcttcatgcaatcgggtcctagt
cgtgaattattcgagctatgggcacccgactcgcggaatggtctcatcataacgggttat
tcgattgagggaactatggccagggacatcatgacagagccggacgaatttgagtcggtc
aaaggaggaacgatacccaggaaaatctccgttgactatatctcattcagcgctcatgtg
gactattctcaaaattcagagttcattgaactcgtaaaggctcaacacatcgttctcgta
catggcgaacagaccgcgatgggaagacttagggcagcaatgacttcgcgttataaagag
cgcgaggaggatgtcaagatacatacaccgagaaactgtgaaacattgaacctttctttc
cgaggtgaacgtgtcgcgaaagcaattgggactttggccgaccagtctccacaacccaac
gatgttctatcaggattgttggttgccaaagactattcatacaccctgctagatcccagg
gatttaaaggacttcgcaggtttatcgacgtgtgtggttagccaaaaacagaggatcact
cttggggttggctgggagctcgtacgatggcatctagaaggtatgtacggtaaggttgaa
gagggtatcgacaaagacggagcaccaacaatacgggttatgggtgccatcgatgttaag
catacagaggagcacgaactgactctggaatgggagtcgagtgcgagcgtcgacatgatc
gctgactcgacgctcgccttgataactgggatagacaaaagcccagcatcagtaaaatta
accaatcattcccactcgcattcgcacaaacatccccatgccgacaacgaaaatgaaacc
tcaatcgtatctaaaataggcatgttcctcgaagcccactttgggtttgagtcgctagag
tatcacgagccggatctattagagaatgataccgaacaaggggaagaggagaggtatccg
gcctttgtggttaccttgccagagggcaccgcttcggttaatttgaatactcttgcggtt
tctagcacgaacgaaaccctcaaaaagcgccttgaagccgttgttaatatggctgtcacg
accgtcagctctttagctcaatcctttagtgtggttgcacccgcctctcatgaagacatg
aacctggataaggatcccacaaaggctgtgctcattcccctcgaggtggagcccaatggt
gtatcaccggccgaacaacgcccttcggatggctga
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