Marasmius oreades (fairy-ring mushroom): E1B28_003825
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Entry
E1B28_003825 CDS
T08156
Symbol
MTR4_1
Name
(RefSeq) ATP-dependent RNA helicase mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
more
Marasmius oreades (fairy-ring mushroom)
Pathway
more03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
more00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E1B28_003825 (MTR4_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
more03019
]
E1B28_003825 (MTR4_1)
03041 Spliceosome [BR:
more03041
]
E1B28_003825 (MTR4_1)
03009 Ribosome biogenesis [BR:
more03009
]
E1B28_003825 (MTR4_1)
03016 Transfer RNA biogenesis [BR:
more03016
]
E1B28_003825 (MTR4_1)
Enzymes [BR:
more01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E1B28_003825 (MTR4_1)
Messenger RNA biogenesis [BR:
more03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
E1B28_003825 (MTR4_1)
Spliceosome [BR:
more03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
E1B28_003825 (MTR4_1)
Complex C
U4/U6.U5 tri-SnRNP related factors
E1B28_003825 (MTR4_1)
Ribosome biogenesis [BR:
more03009
]
Eukaryotic type
Pre-60S particles
Helicases
E1B28_003825 (MTR4_1)
Transfer RNA biogenesis [BR:
more03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
E1B28_003825 (MTR4_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
MTR4-like_stalk
DEXQc_Suv3
nSTAND3
DBC1
Motif
Other DBs
NCBI-GeneID:
66072901
NCBI-ProteinID:
XP_043012851
UniProt:
A0A9P7UX91
LinkDB
All DBs
Position
2:762269..764311
Genome browser
AA seq
569 aa
AA seq
DB search
MDDLFSFLENAAPDIDDAETDDINASFLKKRKPEASELELNGDHPTPLKKQKKETILPPN
PVITDEIEIEAKREVEASAGLQGGVETGSRLELRHQVRHQVAVPPGYNYIPISQRVPPPN
PDREYKFDLDPFQKVSVSAIQRNESVLVSAHTSAGKTVVAEYAIAQSLARKQRVIYTSPI
KILRSMLYRGSEIMREVAWVVFDEIHYMRDKERGVVWEETIILLPHTVRCVFLSATIPNA
MQFAEWICRSHEQPCHVVYTNYRPTPLQHYLFPKGGEGIYLVVNEKGEFREDNFSKAMGE
LQERIGEDPADPKGGKGRKGKTRKGGEKKGEWIVKMVMVKNFNPVIVFSFSKRECEANAI
AMFKSEFNTTEEQDLVSNIFNNAIENLAPDDRQLPQISNLLPLLKRGIGIHHSGLLPVLK
EVIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTDTRKFDGREQRDLSSGEYIQMSGRA
GRRGLDDRGVVIMMCDEKLEPTVAKDMIKGEPDRLDSAFHLGYNMIMNLMKVEGINPEYM
LERCFYQFQKNAGLPKLEEGSSTVNDSLT
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggacgaccttttctccttcctagaaaatgctgcgccggacatcgacgacgcagagacc
gacgatatcaacgcttctttcctcaagaaaagaaaacctgaagcctcggagctcgaactg
aatggcgaccaccccacacctctcaagaaacaaaagaaagaaaccattctacccccgaat
ccagtgatcaccgatgaaatagagatagaagcaaaacgcgaggtggaagcgagtgctgga
ctgcaaggaggtgttgaaaccggctcgagattggagcttagacatcaggttcggcaccaa
gtcgcggtccctcctgggtacaattacattccaatatcacaacgtgtacctccccccaat
ccagaccgagagtacaagtttgatctcgatccgttccaaaaagtctcggtgtccgccatt
caacgtaacgagagtgtcctggtgtctgcacatacaagcgccgggaagactgttgtcgca
gagtatgcaatcgcccaatctctggcaaggaaacagcgtgtcatatatacaagtccaatt
aaaattcttcgttccatgctgtaccgaggctcggaaatcatgcgtgaagttgcctgggtt
gtttttgacgaaatccactacatgcgagataaggaacggggtgtagtttgggaagaaact
atcattcttcttcctcataccgtccgatgcgtcttcctctcagcgactatccccaatgcc
atgcaatttgccgagtggatatgcaggtcacacgaacaaccctgtcacgtcgtctacact
aattaccgaccaactccccttcaacattacctcttcccgaaaggaggggaaggtatatat
cttgtggtcaacgaaaagggtgaattccgggaggacaacttcagtaaggcgatgggggag
ttgcaagagcgtatcggtgaggatccggccgatcccaaaggtgggaaaggaaggaaaggc
aagacgaggaagggcggagaaaaaaaaggcgagtggatagtgaagatggtcatggtcaag
aacttcaatcctgtcatcgttttctctttcagcaaacgcgaatgcgaggcaaatgcaata
gcaatgttcaagtccgagttcaataccacagaagagcaagacctcgtttcgaacatattc
aacaacgccattgaaaaccttgcgcccgacgaccgtcagttaccccagatctcaaacctc
ttgccgctattgaagcggggaatcggaatccatcacagtggacttctaccggttctcaaa
gaggtgatcgagattcttttccaggagggcctgatcaaagtgctctttgcgacagagacg
ttttcgatcggtctcaacatgcctgccaagactgtcgtcttcacggatacacgtaaattc
gatggacgggaacaaagggatttatcttccggtgaatacatccagatgtctggacgcgcc
ggacgtcgaggtctcgatgacagaggggtcgtaatcatgatgtgtgatgagaagttggaa
ccgacagttgcaaaggacatgatcaaaggagaacctgaccggttggattctgctttccat
cttggttataatatgattatgaacttgatgaaggtggagggaatcaatccggaatacatg
ctggagagatgtttctaccagttccagaaaaatgcaggactaccgaagctggaggaaggt
tcatcgacagtcaacgattctttgacttaa
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