Marasmius oreades (fairy-ring mushroom): E1B28_004140
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Entry
E1B28_004140 CDS
T08156
Symbol
FAL1
Name
(RefSeq) RNA helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
more
Marasmius oreades (fairy-ring mushroom)
Pathway
more03013
Nucleocytoplasmic transport
more03015
mRNA surveillance pathway
more03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
more00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
E1B28_004140 (FAL1)
09122 Translation
03013 Nucleocytoplasmic transport
E1B28_004140 (FAL1)
03015 mRNA surveillance pathway
E1B28_004140 (FAL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
more03019
]
E1B28_004140 (FAL1)
03041 Spliceosome [BR:
more03041
]
E1B28_004140 (FAL1)
03009 Ribosome biogenesis [BR:
more03009
]
E1B28_004140 (FAL1)
03012 Translation factors [BR:
more03012
]
E1B28_004140 (FAL1)
Enzymes [BR:
more01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E1B28_004140 (FAL1)
Messenger RNA biogenesis [BR:
more03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
E1B28_004140 (FAL1)
mRNA cycle factors
Stress granule specific factors
E1B28_004140 (FAL1)
Spliceosome [BR:
more03041
]
Complex C
Other components
EJC/TREX
E1B28_004140 (FAL1)
Ribosome biogenesis [BR:
more03009
]
Eukaryotic type
90S particles
Helicases
E1B28_004140 (FAL1)
Translation factors [BR:
more03012
]
Eukaryotic type
Initiation factors
eIF-4
E1B28_004140 (FAL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
TniB
Motif
Other DBs
NCBI-GeneID:
66073216
NCBI-ProteinID:
XP_043013197
UniProt:
A0A9P7UY14
LinkDB
All DBs
Position
2:1683122..1684891
Genome browser
AA seq
396 aa
AA seq
DB search
MSGLNTGDEKLVFESSEAVSVVSTFDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPITQG
RDVIAQAQSGTGKTATFSISILQSIDVTVRETQALVLSPTRELATQIQSVVLALGDYMNV
QCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNK
GFKDQIYDVYRYLPPATQVVVLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKE
RDAIMAEFRGGTSRVLITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKG
VAINFVTVDDVRILRDIEMYYSTQIDEMPVNAAELI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcctcaatacaggagacgagaaactcgttttcgagtcctcagaagccgtttct
gtcgtgtcaacttttgatgaccttggtttgaaggaggacctgttgcgtggcatctatgca
tacaactttgaaaagccttcggcgatccagcaacgtgccatccttcctataactcaagga
cgcgatgttattgcccaggctcagtccggaacgggtaaaacagccacattttccatctca
atactccagtccatcgatgtcactgtcagagaaacgcaggcactcgtcctgtcgcccaca
agagaacttgcaactcaaattcagtcagtggttcttgctttgggagactacatgaacgtg
cagtgtcacgcttgcattggcggtacctcgattggggaagatattcggaaactagagtac
ggtcaacatgtagtttctggtaccccgggacgtgttttcgacatgatcagaaggcgaagt
cttaggacccgtaacatcaaaatgctggtccttgatgaagccgacgaactgctgaacaag
ggattcaaagaccagatatatgatgtttacaggtatctacctcctgcaactcaagtcgtc
gttctcagcgcgaccttaccctacgatgttctggaaatgacgacaaaattcatgacggat
cccatccgtattctcgttaagcgtgacgagttgacgctggaaggtatcaagcagtttttc
gtcgccgtagagaaggaggactggaaattcgacacgctttgcgatctttacgacactttg
acgatcactcaagctgtgatcttctgcaatacaaggcggaaggtggactggttgaccgaa
aagatgagagcttcaaatttcaccgtatcctcgatgcatggtgaaatggttcaaaaggag
cgagatgcgatcatggccgaattccgaggagggacatctcgtgtcctcattacaaccgat
gtttgggctcgaggtatcgatgtgcaacaagtttcgctggtcatcaactacgatcttcca
gcaaatcgtgaaaactatatccataggattggtcgttccggtcgtttcggacggaaaggt
gtcgctatcaactttgtgacggtcgatgatgttcgaatcctacgggatatcgaaatgtat
tacagtacccaaattgatgaaatgccagtcaatgccgcggagctgatttaa
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