Marasmius oreades (fairy-ring mushroom): E1B28_009702
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Entry
E1B28_009702 CDS
T08156
Name
(RefSeq) uncharacterized protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
more
Marasmius oreades (fairy-ring mushroom)
Pathway
more03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
more00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
E1B28_009702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
more03041
]
E1B28_009702
03009 Ribosome biogenesis [BR:
more03009
]
E1B28_009702
Enzymes [BR:
more01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E1B28_009702
Spliceosome [BR:
more03041
]
Complex A
U2 snRNP components
U2 related factors
E1B28_009702
Complex B
E1B28_009702
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
E1B28_009702
Ribosome biogenesis [BR:
more03009
]
Eukaryotic type
90S particles
Helicases
E1B28_009702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
SRP54
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
66078778
NCBI-ProteinID:
XP_043007067
LinkDB
All DBs
Position
6:924442..927699
Genome browser
AA seq
658 aa
AA seq
DB search
MVGETGSGKTTQIPQFVAFSDLPHTKGKLVACTQPWRDIAISMAKRVAEEMDVDLGCEVG
YSVRFEDMTEPGKTFLQYMADDTLLREAMNDPNLTRYSTIILDEAHERTLATDILMALLK
DLAKRRADLKIIIMSATLDALKFQKYFGLSKKSTAPLLKVPGRTYPIEVFYTQEPEPDYF
EAVIKTVLMIHRAEDPGDILVFLTGEEEIEDACKKIKLEADDMVNQNPDSVGPLVCIPLY
PSLPPQQQQRIFDPAPSTVSPSGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQQVYN
PRIGVMFILVTPISKASAQQRAGRAGRTRPGKCFRLYTEKDFIRELEEQTYPEILRCNLS
ITVLELLKLGIKDLIRFDFVDAPSAETLMRALALLNDLAAIDDEGNITALGRTMAEFPLD
PQLSKMLIASPELKCSNEILTITAMLSVSNIWVRPANAQREADEAKALLLVPGSDHLTLI
NVFNQYLQHKYDKNWAWQNYVSGRALAQAENVRDQLQRTMERLGIDVVSLSGRKELYQNV
RKALVIGFFMQVAHKDGKTGYCTVKDGQSVALHPSCCLISQPEWVLFNEFILTTRPYIRT
NTDIRGEWLLELASHYYDLSSFPDSGTKRALQRIAKRNGKPGGISRGGAPASRKQRKR
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggtcggagaaacaggttccggaaagaccacccaaataccacaatttgtggcattttcc
gatttgccacacaccaaaggaaaattagttgcatgcacacaaccatggcgagacattgct
atatctatggcaaagcgtgtagcagaagagatggatgttgaccttggctgtgaagtcggt
tattccgtccgtttcgaagatatgaccgaacctggcaaaacgttcctccaatacatggct
gatgatacgcttcttcgtgaagccatgaatgaccccaacctcacacgatattcgactata
attctcgatgaagcccacgagcgtacccttgcaacagatattctcatggctctcttaaaa
gaccttgccaaacgtcgcgccgatctcaaaatcattataatgtccgccactctcgatgca
ctcaaattccaaaaatactttggcctctcgaaaaaatctaccgcccccctgctcaaagtc
cccggaagaacatatcccatcgaggtcttttacacgcaagaacctgaacccgattacttt
gaggccgttattaaaactgtgttaatgattcatcgtgcagaagatcccggcgatatcctt
gttttcttgacgggagaggaagaaattgaagatgcttgtaaaaaaatcaagctcgaagca
gatgatatggtgaaccaaaaccccgactctgttggacctctcgtatgcatacccctatat
ccatctctacctccgcaacaacagcagagaatattcgatccagcaccttcaaccgtatct
ccatctggacccccggggcgaaaagtcgtagtgtctaccaacattgccgaaacgtcgttg
acaatagatggtatcgtctacgtcgtagatcccggcttctcaaaacaacaagtgtacaat
ccacggataggagtaatgtttatattggttaccccaatctccaaggcttcggcacaacaa
cgggctggacgggctggacgaacacgtcctgggaagtgtttccgactttatacggagaag
gatttcatacgcgaattagaggagcaaacatatcctgaaattctacgatgtaatctcagc
atcactgttctggagttgcttaagcttggtatcaaggatcttatacgatttgacttcgta
gacgccccctctgcagagacgctgatgcgggcactggcacttcttaatgatctggcggca
atcgacgacgagggtaacatcacggctttagggagaacaatggccgagttccctctcgac
cctcagctttcaaaaatgctcatcgcaagtccagagctcaaatgtagtaatgaaattctc
accatcactgctatgctttccgtttctaatatctgggttcgaccggctaatgcacaaaga
gaagctgacgaagccaaagctcttttattggtccctggaagcgatcatctgacgctaatc
aatgttttcaatcagtatctccaacacaagtacgacaagaattgggcatggcaaaattat
gtttctgggcgagctttagctcaagcagagaacgttcgcgatcagcttcagcgaacgatg
gaacgactcggaatagatgtggtctcgctttcaggccgaaaggaactttaccagaatgtt
cgaaaggcgttggttatcggtttcttcatgcaggtggcccacaaggacggtaaaacgggc
tattgtacggtcaaggacggtcagagtgttgcactccatccctcttgttgcctgatttca
cagcctgagtgggttctgttcaacgaattcattttgacgacacgcccatatattcggaca
aatactgacattcggggagaatggttactggagctggcttcgcattattacgatctctca
tccttccctgatagcgggacgaagcgcgctctgcagcgtattgccaagagaaacgggaag
cccggtggaatcagtcgcggcggagcacctgcttcaaggaaacagaggaaaaggtaa
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