Marasmius oreades (fairy-ring mushroom): E1B28_009714
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Entry
E1B28_009714 CDS
T08156
Symbol
RPB1
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
more
Marasmius oreades (fairy-ring mushroom)
Pathway
more03020
RNA polymerase
more03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
more00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E1B28_009714 (RPB1)
09124 Replication and repair
03420 Nucleotide excision repair
E1B28_009714 (RPB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
more03021
]
E1B28_009714 (RPB1)
03400 DNA repair and recombination proteins [BR:
more03400
]
E1B28_009714 (RPB1)
Enzymes [BR:
more01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E1B28_009714 (RPB1)
Transcription machinery [BR:
more03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
E1B28_009714 (RPB1)
DNA repair and recombination proteins [BR:
more03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
E1B28_009714 (RPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
66078790
NCBI-ProteinID:
XP_043007082
UniProt:
A0A9P7RVT0
LinkDB
All DBs
Position
6:955220..961774
Genome browser
AA seq
1672 aa
AA seq
DB search
MLGHQFAFSSAPVRKVKEVQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKMGGLMDPRM
GTIDRNFKCQTCGEGMAECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADIS
DPNFADKIRHIRDPKKRMAVVWAHCKTKMVCDPDDPKEEGAEPDAEETKKGHGGCGHTQP
LVRKEGLKLFLQYKKPKDDDEEVKSMQPDKRLMTPSEVYTTFKKMSDSDLHLIGLSEDYA
RPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHV
ISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS
ARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNIVYLQELVRNGPTTYPGARYVVRD
TGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFR
LNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLC
GIRKFTLRDTFLDWNHVQNILLWVPEWDGVVPVPAILKPKPLWTGKQILSLVIPRGINIH
RAPDPKSSNPVFDDGMMIDNGEIIFGIVKKDTVGASQGGLVHVVFREKGPEATRQLFTGL
QMVVNFWLFHNGFSIGIGDTIADMETMSYITQTIAESKANVAKIIEDAYHDRLKAAPGMT
IRESFESLVERQLNLARDTSGRYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQS
VEGKRIPFGFRHRSLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAV
KTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDGAFIEKQSTDTFGLN
DREFEHNYRVDVTDPSGGFLPGVLQIGLDDSSLELQSKLDEEYAVLCEDRRLLRNFIFSR
QDPSVNQYLPVNLQRIVQNAIQIFHIDRRKPSDLEPAYIIDAVKDLCDRLIVVRGNDPLS
REAQENATLRFKMHLRASFACRRVLERFHLNREAFEWVLGEVESKFNQSVANPGEMCGTL
AAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVYLEPHVSSD
PVLAKNVQQELAYTSLRTVTAAVEIWYDPDPSSTIIEEDQLFVESFFAIPDEEVESKLHL
QSPWLLRLELDRAKMIDRKLTMNYVASRIAESFKTDLFVIWSEDNSEKLVIRCRVLGGAD
KDDDGMESVEEDIFLRQLENTMLNSVSLRGVRGVKRVFLMKHDKVELKDDGSLVTEKEKE
WVLETDGVNLKTVMCLDGVDFTRTYSNSCVEIFNVLGIEGARAAIMKELRNVIEFDGSYV
NYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCHG
IAENVMFGQMAPMGTGAFEVALDIDMLKDAIVDHRLPVQSMLAAQVDGGMTPGQVAMTPY
DSNSPMWQDQAFKADQAAFSPLAVNGGDESSNFQWMPYGQSPLHGAMSPAGPGYSPSSPN
AYSPTSPGFVPQSPFGGATSPFGTSPHATSPFYEPGRGATSPTYSPTSPAFNPTSPAYSP
TSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPSNM
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atgttgggccatcaatttgccttttcttctgctccagtgcgcaaggtaaaggaggtgcag
tttggtattctctcaccagaagagatcaaagcatactccgttgccaaaatcgaacaccca
gaagtcatggatgagactacacacaaaccaaaaatgggtggacttatggatcctcggatg
ggaacaatagaccgaaatttcaagtgccagacgtgcggtgaaggtatggcggaatgcccc
ggtcactttggtcatattgagctggcgagacctgtgtttcaccctgggttcattgtcaaa
gtgaagaagattctggaatgtatatgtgttaactgtggaaagttgaaagccgacatctcg
gaccccaactttgctgacaagattcgtcacatccgcgaccccaaaaaacgcatggctgtt
gtctgggcacactgtaaaacaaaaatggtttgcgaccccgatgatcccaaggaagaagga
gccgaacctgatgcagaagagacaaagaaaggccatggtggttgcggtcatacccaacct
cttgtaaggaaggagggcctgaagctcttcttacagtacaagaagccaaaggatgacgac
gaggaagtcaaatccatgcaaccagataagaggctgatgacaccttcagaagtctacacg
accttcaagaagatgtcggattcagaccttcatttaatcggcttgtcagaagattacgcc
cgcccggaatggatgatcctcaccgtgatgcctgtcccccctcccccagtacggccgagt
atcgcagtcgacggcggcgcaatgcggagtgaagacgacttgacatataagcttggagac
ataattaaagcctctgcaaacgtgcggagatgcgagcaggaaggggctcctgctcacgtc
atttccgagtttgaacagctattacaatttcatgtcgcgacgtatatggacaacgacata
gcgggaattcctcaggcattgcagaaatccggtaggcccgtcaaggctatccgtgctcgg
ctaaagggaaaagaggggcgcttgcgaggaaacttgatgggaaagcgtgttgatttctct
gctcgcactgtgattactggtgatcctaatctcgagttggacgaagtcggagtgccgaga
agtattgcaatgaatttaacgtttccagaacgagtcaccccgtacaacattgtttattta
caggagctagttaggaatgggccaaccacctaccctggcgcacgctacgtagtgcgtgat
acaggagaacggatagatctcaggtacaacaagcgagcggatgcctttcttcagtatgga
tggatcgttgagcgccatctaaaggatggagatttcgtgctattcaatcgacaacctagt
ttgcacaagatgagtatgatgagtcatcgggttcgtttaatgccatattccactttccga
ttaaatctttctgttacgcccccgtacaatgctgacttcgatggcgacgaaatgaacatg
catgtaccacaaagtgaagagactcgagctgagctcagtcaaatagcatgggttcctcga
cagataatatcaccccaggccaacaagcctgtcatgggaatcgtacaggatacactttgt
gggattcgaaagttcacactacgggatacattcttggattggaatcatgtgcagaacatt
ctcctctgggttccggaatgggacggtgtagttccagttcctgccattctcaaaccgaaa
ccattgtggaccgggaaacaaattctcagcctcgtcattccgcggggtatcaacattcac
cgtgcaccagatcccaaatcatccaatcctgtcttcgacgacggtatgatgattgacaac
ggcgaaatcatctttggcatagtgaagaaggataccgtcggtgcctcacagggtggactg
gtgcacgtcgttttcagagaaaaggggcccgaggctacgaggcagctcttcaccgggttg
cagatggtcgtaaacttctggttgttccacaacggttttagcatcggtattggcgacacg
attgcggatatggaaaccatgtcttacatcacccaaaccatcgcggagagcaaagcaaac
gtcgcgaagatcatagaggatgcttatcacgaccgtctcaaagctgcacctggtatgacc
attcgtgaatcattcgagagtttggtggagcgacagcttaaccttgctcgtgatacttcg
ggtcggtatgcgcaaaagaatttgaaggaggacaataacgtcaagcagatggtggtggca
ggatccaagggttccttcattaacatctcgcagatgtcggtttgtgtgggacaacaaagt
gtggagggaaaacgtataccattcgggttccgccatcggagtctgcctcactttaccaag
gacgacttcagtccagaagcgagaggcttcgtcgagaattcttaccttcgtgggctgacg
ccgcaggagttcttcttccatgcaatggctggaagagaaggtctcatcgatactgctgtt
aagaccgcggagacaggttatatccagcgtcgattggtgaaagcgttggaagatgtgatg
gtatgctatgatgggacggtccggaactccctcggggatctaattcagtttgtctacggt
gaagatggcatggatggagcgttcatcgagaagcagagtacggatacgtttggactcaac
gacagggaattcgagcacaactatcgtgtcgacgtcacagatcctagtggtgggttcctt
cctggagtgttacagatcggcctcgacgacagttcattggagcttcaatccaaactcgac
gaagagtatgctgtgctctgtgaagaccgtcgcctactccggaacttcattttctcaagg
caagatccgtcggtcaaccaataccttcccgtcaatttgcagcgtatcgtccaaaatgct
atccagatcttccatatcgacaggcgaaaacccagcgatctcgaacccgcgtatatcatc
gacgcagtgaaagatctttgcgaccggctcatagtcgtccgtggaaatgacccgttgagt
cgcgaagcgcaggaaaatgctacccttcgcttcaaaatgcatcttcgtgctagcttcgct
tgtcggcgagttctggagagattccaccttaatcgagaggctttcgaatgggttctggga
gaggtcgaatcgaagttcaatcaatccgtggctaacccaggagaaatgtgcggaacactg
gctgcacagtctattggagaaccagcaacgcaaatgaccctcaacaccttccactatgcc
ggtgtctcgagtaagaacgtgacactcggtgtacctcgtttgaaggaaatcatcaacgtg
gccaccaacatcaaaacaccgtccttgactgtctatctcgaacctcatgtgtcatccgat
ccagtgttggcgaagaatgttcagcaagaacttgcctatacatctcttcggacggtcact
gcagcggtagaaatctggtatgatccagatcccagctccaccatcattgaagaagaccag
ctcttcgtcgagtcattcttcgccattcccgatgaagaggtcgagtccaagttgcacttg
caatcgccatggctgcttcgtctcgaactcgaccgtgccaaaatgatagaccgtaagctg
accatgaactacgtcgccagccgcatagccgaaagcttcaaaaccgatcttttcgtcata
tggagtgaagataactctgagaagttggtaattcgctgcagggtactcggtggcgcggat
aaggacgacgatggtatggaatcagtggaggaagacatatttttacggcagctcgagaac
accatgctcaactctgtcagcttacgaggtgtccgaggcgtcaagcgtgtcttcctcatg
aaacacgacaaggtcgagttgaaagacgatggcagtctagtgacggagaaagagaaggaa
tgggtgctggaaacagatggtgtcaacttgaagacagttatgtgcctcgacggtgtcgat
tttacgcgcacttactcgaacagctgtgtggagatattcaatgttcttggaattgaaggg
gcacgggctgcgatcatgaaagagttgcgtaatgtcatcgagtttgacggttcatacgtg
aactacaggcatcttgctctcctctgtgatctcatgacccaccgtggaagtctgatggct
atcactcgacacggtatcaaccgtgctgatactggtgcgctcatgaggtgttcgttcgaa
gagacagtcgaaattctaatggaggcagcggctgttggagagaaggacgattgtcacggt
attgcagaaaatgtgatgtttggtcaaatggcgccgatggggactggtgctttcgaggtt
gcgcttgacatagacatgctgaaagatgccattgtggatcaccgtctacctgtccagtcc
atgcttgctgcccaagtcgatggcggtatgacgccaggtcaagtagcgatgacaccgtac
gattccaattcgccgatgtggcaagatcaggcattcaaagccgatcaggctgctttctct
cctctcgcagtgaatggtggagacgaatcaagtaacttccaatggatgccttatggacag
agtcctcttcatggcgccatgtcgcccgcaggccctgggtacagtccaagctcgccgaat
gcatactctcccacctctcctggctttgtaccgcagtcaccgttcggtggtgctacctca
ccattcggtacctctcctcatgcaacatcacctttttacgaacctggcagaggagcaacg
tcccctacctactcacctacatcccctgccttcaatccaacctcgcctgcatattctcct
acaagtccccggtattcaccaacgtcaccatcattctctccgacttccccacggtacagt
ccgcaatcgccttccttcagcccaacttctcctcgctactctcccactagtccctcgttc
agtccggcgtccccgcggtactctccaagcaacatgtaa
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integrated database retrieval system
