Marasmius oreades (fairy-ring mushroom): E1B28_009871
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Entry
E1B28_009871 CDS
T08156
Symbol
SUB2
Name
(RefSeq) Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
more
Marasmius oreades (fairy-ring mushroom)
Pathway
more03013
Nucleocytoplasmic transport
more03015
mRNA surveillance pathway
more03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
more00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
E1B28_009871 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
E1B28_009871 (SUB2)
03015 mRNA surveillance pathway
E1B28_009871 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
more03019
]
E1B28_009871 (SUB2)
03041 Spliceosome [BR:
more03041
]
E1B28_009871 (SUB2)
Enzymes [BR:
more01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E1B28_009871 (SUB2)
Messenger RNA biogenesis [BR:
more03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
E1B28_009871 (SUB2)
Spliceosome [BR:
more03041
]
Complex C
Other components
EJC/TREX
E1B28_009871 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
E1B28_009871 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
66078947
NCBI-ProteinID:
XP_043007256
UniProt:
A0A9P7RX45
LinkDB
All DBs
Position
6:complement(<1495037..>1497134)
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AA seq
436 aa
AA seq
DB search
MSAHDNEDLIDYEDENDVTTNGFTAVAGTAASGAAATVGEDKDKKNFSGIHSTGFRDFLL
KPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNG
QVSVLVLCHTRELAFQIKNEYTRFAKYMPDVRISTFYGGTPVSKDAEILRDKTKCPHIVV
ATPGRLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRTTPHHKQVMMFSAT
LAKDIRATCKKFMSNPLEIFVDDETKLTLHGLQQHYVKLEENAKNRKLNELLDTLEFNQV
VIFVKSVARAIELDKLLVSCNFPSIAIHSGLQQEERIRRYTAFKAFEKRILVATDIFGRG
IDVERVNIVINYDSPPDADSYLHRVGRAGRFGTKGLAITYVSSDEDQQVMSAIQSRFEVA
VPELPDHIDPASYMTS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctcacgacaacgaggatcttattgactacgaggatgaaaatgacgtgaccacc
aacggtttcactgccgttgctggtactgcggcatctggtgcagcggcaacggttggagaa
gacaaggacaaaaagaacttttcaggcatccattcgactggcttccgggatttcctgctc
aagcctgaacttctgcgtgcaattagtgacttgggttttgagcacccttcagaagttcaa
caggaatgcatccctcaagccgtcctcggaatggatgtcttgtgtcaggcgaagtccgga
cacggcaaaactgccgttttcgttctagccaccctccagcagcttgaacccgtcaatggt
caagtttccgtccttgtcctttgccacacccgcgaactggccttccagatcaaaaacgag
tacacccgtttcgccaagtatatgcccgacgtccgaatcagcactttctatggcggcact
ccagtttcaaaagatgccgaaatcctccgagacaagaccaaatgcccacacatcgtcgtc
gccacccccggtcgtttgaacgcactcgcgagagataaagtcttggatgcaaagaacgtg
aaacattttgtgctggacgaatgcgataaaatgctggaacagcttgacatgcgtcgagac
gtacaagaaattttcaggactacccctcatcacaagcaagtcatgatgtttagcgccact
cttgcaaaggacatcagagcaacgtgcaagaaattcatgtcgaatccccttgaaattttc
gtggatgacgagacaaaactcaccctgcacggtctccaacaacattatgttaagctcgaa
gagaatgccaaaaacagaaaactgaacgagttgctcgatactctagagttcaaccaggtc
gtcatctttgtcaagtcagttgctcgcgctatcgaattggacaagctcctcgtcagctgc
aatttcccgagtatcgccattcactcaggtctgcagcaggaagaacgtatacgtcgttat
actgccttcaaggcatttgaaaaacgtatcttggtcgcgacagatatttttggacgtggc
attgatgtcgagcgtgtcaatattgtgatcaattatgattctccacctgacgccgacagc
taccttcatcgtgtcgggcgagctggacgtttcggaacgaaaggtctcgccataacctac
gtttcttcggatgaagatcagcaggtcatgtccgccatccagtcgaggttcgaggtcgcg
gttcctgaacttcccgaccacatcgaccctgccagctacatgacatcctag
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