Microtus oregoni (creeping vole): 121433168
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Entry
121433168 CDS
T08307
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121433168 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
morg03041
]
121433168 (Prpf40a)
Spliceosome [BR:
morg03041
]
Complex A
U1 snRNP components
U1 related factors
121433168 (Prpf40a)
Complex B
121433168 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
121433168
NCBI-ProteinID:
XP_041487361
LinkDB
All DBs
Position
Unknown
AA seq
969 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESQPPSRGPGDGERRLSGSNLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMSGMMMSHMSQASMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGGLITKSNLHAMIKAEESSKQEECTTTSIAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAANANTSTTPTNTVGSVPVAPEPEVTSIVATVVDNENSVTIANEEQAQIANTTAIQDLS
GDMSSSAGEEPSKQETVTDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSN
ASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLE
NHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWE
ALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEE
EEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQ
PVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKR
STTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWE
DIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRS
RSGSESDDDDSHSKKKRQRSESHSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPES
DTEREKDKKDKDRESEKDRSRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRT
LLEQLDDDQ
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagcggcagtggccgccgacggagcagtctgagcccgacgatgaggccggggact
ggagccgagcgtggaggcctcatggtgagtgaaatggagagccaacctccctcgcggggt
cccggggacggggagcggagattgtccggctcaaacctgtgctccagttcttgggtctct
gctgacggcttcctgaggagacggccctcgatggggcatcctggcatgcattacgcacca
atggggatgcaccctatgggtcagagagcaaacatgcctcccgtacctcatggaatgatg
ccacagatgatgccccctatgggaggacctccaatgggacaaatgcctggaatgatgtct
tcagtaatgtcaggaatgatgatgtctcatatgtctcaggcttccatgcaacctgcctta
ccgcctggagtaaacagtatggatgtagctgcaggtgccgcatctggtgcaaaatcaatg
tggacagaacataaatcacccgatggaaggacttattattataatactgaaacaaaacag
tctacctgggaaaaaccagatgatcttaaaacacctgctgagcaactcttgtctaaatgc
ccgtggaaagagtacaaatctgattctgggaagccttattactataattctcagacaaaa
gagtcccgctgggccaaacccaaggaacttgaggatcttgaaggataccagaataccatt
gttgctggaggtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagc
agcaagcaagaagaatgtactacaacatccatagccccagttcctacaacagaaattcct
accactatgagcaccatggctgctgcagaagcagcagctgctgttgttgcagctgctgca
gcagctgctaatgccaatacttccaccacacctactaatactgtcggaagtgttccagtt
gctcctgagcctgaagttacttccattgttgctactgttgtcgataatgaaaattcagtc
actatagccaatgaagaacaagcacagattgctaataccacggctattcaagatctaagt
ggtgacatgtccagtagtgctggagaagaaccttctaaacaagaaactgtaaccgatttt
actcctaaaaaagaagaggaagagagccaacctgcaaaaaaaacatatacttggaataca
aaggaggaggcaaagcaagcatttaaagaattattgaaagaaaagcgggtaccctccaat
gcttcatgggaacaagctatgaaaatgatcattaatgatcctcggtacagtgcgttagca
aagctgagtgaaaaaaagcaggcttttaatgcctataaagttcagactgagaaagaggaa
aaagaagaagcaagatcaaaatacaaagaagctaaggaatcttttcagcgttttctagaa
aatcatgagaaaatgacttccacaaccagatacaaaaaagccgagcaaatgtttggggag
atggaagtttggaatgctatttcagaacgtgatcggcttgaaatctatgaagacgttttg
ttcttcctttcaaaaaaagaaaaggaacaagcaaagcagttacgaaagagaaattgggaa
gccttaaaaaacatacttgacaatatggctaatgttacgtactctactacttggtctgaa
gcccagcagtatctaatggataacccaacgtttgcagaggatgaagagttacagaacatg
gataaagaagatgcattaatatgctttgaggaacatatccgggctttagaaaaggaagaa
gaagaagaaaaacagaagactttattgagagaaaggaggcggcagcgtaaaaatagggaa
tctttccagatatttttagatgaattacatgagcatggacaactacattctatgtcctct
tggatggaactgtatccaactattagttctgacattagattcactaatatgcttggtcag
ccggttttttcattaggatcaactgcacttgatcttttcaagttttatgttgaagatctt
aaagcacgttatcatgatgaaaaaaagataataaaagacattcttaaggataaaggattt
gtagttgaagtaaatactacttttgaagattttgtggcaataatcagttcaacaaaaaga
tcaactactttggatgcgggaaatatcaagttggctttcaatagtttactagaaaaggca
gaagcccgtgagcgtgaaagagaaaaagaggaagcacggaaaatgaaaagaaaagagtct
gcatttaagagtatgttgaaacaggctgctcctccgatagagctggatgctgtttgggaa
gatatccgagagagatttgtaaaagaaccagcatttgaggacataactctagaatctgaa
agaaaaagaatatttaaagatttcatgcatgtgcttgagcatgaatgccaacatcatcat
tcaaagaacaagaaacattctaagaaatccaaaaaacaccataggaaacgctcccgttct
cgatcgggatcagaatcagatgatgatgacagccattcaaagaaaaaaagacagcgatca
gagtcccattctgcttcagaacattcttctagtgctgagtccgagagaagttataagaaa
tcaaaaaagcataagaagaaaagcaaaaagaggagacataaatctgattctccagaatca
gatactgaacgagagaaggataaaaaagataaagatcgggaaagcgaaaaagacagaagt
agacagagatcagagtcaaaacacaaatcacctaagaaaaagactggaaaggattctggt
aactgggatacttctggcagcgaactgagtgaaggggaattagaaaagcgcagaagaaca
cttttggagcaactggatgatgatcaataa
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