Microtus oregoni (creeping vole): 121435257
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Entry
121435257 CDS
T08307
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg03013
Nucleocytoplasmic transport
morg03015
mRNA surveillance pathway
morg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121435257 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
121435257 (Ddx39b)
03015 mRNA surveillance pathway
121435257 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
morg03019
]
121435257 (Ddx39b)
03041 Spliceosome [BR:
morg03041
]
121435257 (Ddx39b)
Enzymes [BR:
morg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121435257 (Ddx39b)
Messenger RNA biogenesis [BR:
morg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121435257 (Ddx39b)
Spliceosome [BR:
morg03041
]
Complex C
Other components
EJC/TREX
121435257 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121435257 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121435257
NCBI-ProteinID:
XP_041490397
LinkDB
All DBs
Position
Unknown
AA seq
480 aa
AA seq
DB search
MCLCQSLSFQASSFVRTLVSFSSVPRTPLSHSFSPALGPLTPRPPSPRAGPVMAENDVDN
ELLDYEDDEVETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHP
SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMCHTRELAFQ
ISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK
HIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPME
IFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLV
EQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDS
DTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtgtctctgtcagtcactttccttccaggcaagctcttttgtcagaacactggtgtct
ttctcttctgttcctcgaacgcctctttcccattctttctcacctgctctgggaccactc
accccaagacctccctctccccgtgccggcccagttatggcagagaatgacgtcgacaac
gagctcttagactacgaagatgatgaagtggagacagcggctgggggagatggcaccgaa
gcgcctgccaagaaagacgtcaagggctcctacgtctccatccacagctccggcttccga
gacttcctgctcaagccagagctgctccgggccattgtagactgtggctttgagcatcca
tcagaagtccagcacgaatgcatccctcaggccattctggggatggatgtcctgtgccag
gccaagtcgggcatggggaagacagcagtgtttgtcctggccacactgcagcagctggag
ccaatcactgggcaggtgtctgtgctggtgatgtgtcacactagggagctggcctttcag
atcagcaaggagtacgagcgcttctcaaagtacatgccgaacgtcaaggtggcagtgttt
tttggcggtctgtctatcaagaaggatgaagaggtgctgaagaagaactgcccacacatc
gtcgtggggactcctggccgaattctagccctggctcgaaataagagcctgaacctcaag
cacattaaacactttatcttggacgagtgtgacaagatgcttgaacagctcgacatgcgt
cgggatgtccaggaaatctttcgcatgaccccccacgagaagcaggtcatgatgttcagt
gccaccttgagcaaagagatccggccagtctgccgcaagttcatgcaagatcctatggag
atcttcgtggatgacgagaccaagttgacgctgcatgggttgcagcaatactacgtgaaa
ttgaaggacaatgagaagaaccggaagctttttgaccttctcgatgtcctcgagttcaac
caggtggtgatctttgtgaagtccgtgcagcgctgcattgccctggcccagcttctagtg
gagcagaacttcccagccattgccatccaccgtgggatgccccaggaggagaggctctct
cggtatcagcagttcaaggatttccagcggcggattcttgtggctaccaacctgtttggc
cgaggaatggacattgaacgtgtgaacatcgccttcaactatgacatgccagaggactcg
gacacctacctgcaccgggtggccagggcaggccggtttggcaccaagggcttggctatc
acatttgtgtcagatgagaatgatgctaagatcctcaatgacgtgcaggaccgctttgag
gtgaacatcagtgaactacctgatgagattgacatctcctcctatattgaacagacgcgg
tag
DBGET
integrated database retrieval system
