Microtus oregoni (creeping vole): 121436181
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Entry
121436181 CDS
T08307
Symbol
Ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121436181 (Ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
morg03041
]
121436181 (Ddx42)
Enzymes [BR:
morg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121436181 (Ddx42)
Spliceosome [BR:
morg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121436181 (Ddx42)
Complex B
121436181 (Ddx42)
Complex C
U2 SnRNP specific factors
121436181 (Ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
121436181
NCBI-ProteinID:
XP_041491833
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSSTGASGWTSAGSLNSVPTNSTQQGHNSADNPVTSAAKNIPGFSSSGNISSAPVTY
PSVGNQGVNNTASGSNSREGIGGGNGKRERYTENRGGGRHSHGDGGNRHGDGGRHGDGYR
YPESSSRHTDGHRHGENRHGGSASRHGETRGANDGRNGESRKEGFNRENRMDPKVDSNKI
EKVDSKSDKTPDGFAVPEPPKRKKSRWDS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggaactaagcggggatttggctttggaggttttgcc
atcagtgctggaaaaaaggaggaagccaagttgccacagcagtcccacagtgcctttggg
gcagccagctcttcttctggattcgggaagtctgctccacctcagcttccttctttctac
aagattggatctaaacgggccaattttgatgaagaaaatgcgtattttgaggatgaagaa
gaagactccagcaatgtagatttaccttacattcctgctgaaaactcacctacccgccaa
cagttccattcaaaaccagcagattcggacagtgatgatgatcccttggaggcatttatg
gctgaagtagaggatcaggcggctagagacatgaagagacttgaagaaaaggacaaggaa
agaaaaaatgtaaagggtattcgagatgacattgaagaagaagatgaccaagaagcttat
tttcgatacatggcagaaaacccaactgctggggtggttcaggaggaggaggaagacaat
ctggagtatgatagtgatggaaatccaattgcaccttccaaaaaaattattgatcctctt
cctcctattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgaa
catgaggagataaccaacctcaccccacagcagttaatagacctgaggcataaactcaac
cttcgggtctctggggctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacagcttatgcaccagattcggaagtctgagtacacacaaccaactcccatacaa
tgtcagggtgttcctgtagcattaagtggtagagacatgattggtattgctaaaacaggc
agtgggaaaaccgcagcctttatttggcccatgttgattcatataatggatcagaaggaa
ttggaaccaggtgatggaccgattgctgtgattgtgtgccccactagggagctttgtcaa
cagatccacgcagaatgtaagcggtttgggaaagcttataatcttcgatcagtggcagta
tatggaggaggaagcatgtgggagcaggccaaggcccttcaggaaggagcagagattgtt
gtttgtaccccaggtcggctgattgatcatgtgaagaagaaggctactaatcttcaaaga
gtctcttaccttgtgtttgatgaagccgaccggatgtttgacatgggatttgagtaccag
gttcgttccatagcaagtcatgtccgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagattgaaaaattggccagagacatcttgattgaccctattcgagtagtg
cagggagacattggagaggcaaacgaagatgtgacacagattgtggagatactccattct
gggcccagtaaatggaactggcttactcggcgtctggtggagtttacttcttcagggagt
gttcttctatttgttactaaaaaagccaatgctgaagaactagccaataaccttaagcag
gaaggtcataatcttggtctgctccatggggatatggatcaaagtgaaagaaacaaggtc
atttcagattttaagaaaaaggacatccccgtcctggtggccactgatgttgcagctcgt
ggtctggacattccttcaattaagacagtcattaactatgatgtagcacgagacattgat
acccatactcataggattggccgaacagggagagctggtgagaagggcgtggcctatacc
ttactgaccccaaaggacagcaattttgctggtgaccttgttcggaacctggaaggagcc
aaccaacatgtttctaaggaactcttagacctggcaatgcagaatgcctggtttcggaaa
tcccgcttcaaaggagggaaaggcaaaaaactgaacattggtggaggaggcttaggctat
agagagcgtcctgggttaggctccgagaattcggaccgaggaaataacaacaatgtaatg
agcaattatgaagcctacaagccctccacaggagccatgggagatagactgacagcaatg
aaagcagcttttcagtcccagtacaaaagtcactttgttgcagccagtttaagcaatcag
aaggctggaagttcttctactggggcaagtggatggactagtgcgggaagcttaaattct
gttccaactaattcaacacaacagggccataacagtgcagacaaccccgtcaccagtgct
gccaagaacatcccaggcttcagcagttctgggaatatcagcagtgccccagtgacctac
ccttctgttggaaaccaaggagtcaacaacacggcttcagggagtaacagtcgtgaaggg
attgggggtggcaatggaaagagagagagatatactgagaacaggggtggtggccgtcat
agtcatggagatggtggcaatcggcatggagatggtggtcgccatggagatggataccgt
tacccagaaagcagcagccgtcacactgatggccaccgacatggagagaacaggcatgga
ggaagtgccagcagacatggagagacccggggtgcaaatgatggtaggaatggggaaagc
aggaaagaaggctttaatcgtgaaaacaggatggaccccaaggtggacagcaacaagata
gaaaaagtggacagcaaatcggataaaacacctgatggttttgctgttccagagccaccc
aaacgcaagaaaagtcgatgggacagttag
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