KEGG   Microtus oregoni (creeping vole): 121439844
Entry
121439844         CDS       T08307                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
morg  Microtus oregoni (creeping vole)
Pathway
morg03030  DNA replication
morg03410  Base excision repair
morg03420  Nucleotide excision repair
morg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:morg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    121439844
   03410 Base excision repair
    121439844
   03420 Nucleotide excision repair
    121439844
   03430 Mismatch repair
    121439844
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:morg03032]
    121439844
   03400 DNA repair and recombination proteins [BR:morg03400]
    121439844
Enzymes [BR:morg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     121439844
    6.5.1.6  DNA ligase (ATP or NAD+)
     121439844
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     121439844
DNA replication proteins [BR:morg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    121439844
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     121439844
DNA repair and recombination proteins [BR:morg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     121439844
   NER (nucleotide excision repair)
    Other NER factors
     121439844
   MMR (mismatch excision repair)
    Other MMR factors
     121439844
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR
Other DBs
NCBI-GeneID: 121439844
NCBI-ProteinID: XP_041496389
LinkDB
Position
Unknown
AA seq 922 aa
MRKKQQRSIMSFVQPTKEGKAKKPEKETANSIGEKESPPKVALKERNRLVSESDSPVKRP
GRKAAQVLSSEGEEEDEAPGTPKVQKSVSDSKQNSPSSPDTCPENSRFFNSPFMDISPSG
FPKHRTARKQLPKGTIQNSVEEQNEDKGRAAKKRKKEEEAQTPTESLTEAEDVKQKEEKE
GSQSIVPPEPAKSPESVTLSKTENIPVCKAGVKQDPQEEEQSKPPARSAKTLSSFFAPRK
PAVKAEVKQEEAGTPRKEETKGTLDPTNYNPSKSNYHPIEDACWKHGQKVPFLAVARTFE
KIEEVSARLKMVETLSNLLRSVVALSPPDLLPVLYLSLSRLGPPQQGLKLGVGDGVLLKV
VAQATGRQLKSIRAEVAEKGDVGLVAENSHSTQRLMLPPPPLTTSWVFTKFCDIARLTGS
ASMAKKVDIIKGLFVACRHSEARFIARSLSGRLCLGLAEQLVLAALAQAVSLTPPGQEFP
PAVVDAGKGKTADARKMWLEEXGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCRLSPG
IPFKSMLAHPTRDVSEVLKHFEEVDFTCEYKYDEQRAQIHVLEGGDVKIFSRNQEDNTGK
YPDIISRIPKIKLPSVTSFILDTEAVGRDREKKQIQPFQVLTTQKRKKVDASEIQVQVCL
YVFDLIFLNGESLTRQPLSRRRQLLWENFVETEGEFVFATSLDTKDIEQISEFLEQSVKD
SCEGLMVKTLDVDATYEIAKRSRNWLKLKKDYLDGVGDTLDLVVIGAYLGWGKRAGRYGG
FMLAAYDEESEELQAICKLGTGFSDEELEEHHQSLKALVLPTPPSYVRIDGAVAPDHWLD
PSVLWEVKCADLSLSPIYPAARSLVDKEKGISLRFPPFIRVRGDKQPEQATTSDQVACLY
RKQSQIQNQQSSDVDSDFEDCY
NT seq 2769 nt   +upstreamnt  +downstreamnt
atgagaaagaaacagcagagaagtattatgtcatttgtccaacccaccaaagagggtaaa
gcaaagaagcctgaaaaggagacagccaacagcatcggagagaaggagtcccctccaaag
gtagcattgaaagagaggaatcgactggtgtctgagagtgactctccagtgaagaggcca
ggaaggaaggcagcccaggtcctaagcagtgaaggggaggaggaagatgaggctcctggc
acccccaaagttcagaagtctgtatcagactccaaacagaactctccttccagccctgac
acatgtcctgagaatagtcgtttcttcaacagccccttcatggatatctccccatcagga
ttcccgaagcatcgcactgctcggaagcagctcccgaaagggacaattcagaactctgtg
gaggagcagaatgaggacaaaggtagagcagccaagaaaaggaagaaggaagaagaagca
cagacgccaacagaaagtctcacagaggctgaagatgtaaaacagaaggaagaaaaggag
gggagccagtccatagtgccccctgagcctgcaaagtcccctgagtcagtaaccctgtca
aagacagagaacattccagtgtgtaaggctggcgtgaaacaggatcctcaggaagaggag
cagagcaaacctcctgctagaagtgctaagacactcagcagcttctttgctcctcggaag
ccagcagtgaaagctgaagtgaaacaagaagaggcaggtactccaaggaaggaagagacc
aagggaaccctggatccaacaaattacaatccttccaagagtaactaccatcccattgaa
gatgcctgctggaaacacggccagaaggttccttttcttgctgtggcccggacatttgag
aagatagaggaggtttctgctcgcctcaagatggtggagacactgagcaacctgctacgc
tctgtggtggccctgtcacccccagacctgctccctgtcctttacctcagcctcagccgc
cttgggccacctcagcagggactaaagctgggcgttggtgatggtgtcctcctcaaggta
gttgcccaggccacaggtcgtcagctgaagtccatccgggctgaggtagctgagaagggt
gatgtgggactggtggccgaaaacagccacagcactcagagactcatgctgcccccacct
ccactcaccacctcctgggtctttaccaaattctgtgacattgcccggctcactggcagt
gcttccatggctaagaaggtggacatcatcaagggcctttttgtcgcctgccgccactca
gaagcccgattcattgccaggtccttaagtggacggctgtgccttgggctggctgagcag
ttggtcttggctgcacttgcccaggctgtgagcctcacaccccctggccaagaatttccc
cctgctgttgtggatgctgggaagggcaagacagcagacgccagaaagatgtggttggaa
gaataaggcatgatcttgaagcagaccttctgtgaggtgcctgacctggatcgaatcatc
cctgtgctgttggaacatgggctggaacgtctcccagagcactgcaggctgagccctggg
atcccttttaaatcaatgctggcccatcccactcgggatgtcagcgaggtactgaagcac
tttgaggaggtggacttcacctgcgagtataaatacgatgagcagcgggcacagattcat
gttctggaaggtggagacgtgaagatcttcagcaggaaccaggaagacaacacaggaaag
taccctgacatcatcagccgcatccccaagattaaactcccctctgtcacttctttcatc
ctggacactgaggctgtgggccgggatcgggaaaagaagcagatccagccattccaagtg
ctcaccactcaaaagcgcaagaaggtagatgcatcagagatacaggtgcaggtgtgtctg
tatgtctttgatctcatcttcctcaacggagagtccctgactcgccagcccttgtctcga
cgccggcaactgctctgggagaactttgtggagacggagggcgagtttgtctttgccacc
tccctggacaccaaagatatcgagcagatctctgagttcttggagcagtcggtgaaggac
tcctgtgaggggctgatggtgaagaccctggatgttgatgccacctatgagatcgccaag
aggtcacgcaattggctcaagctgaagaaggactaccttgacggtgtgggtgacactctg
gatcttgtggtgattggtgcctatctgggttgggggaagcgtgctggccggtatgggggc
ttcatgttggctgcctatgatgaagagagtgaagagctgcaggccatatgcaagctggga
actggattcagtgatgaagagctggaggagcatcaccagagcctgaaggccctggtattg
ccaaccccaccctcctatgtgagaattgatggggcagtggctccagaccactggctggac
cccagtgtcctgtgggaggtgaagtgtgcagatctctctctgtcccccatctaccctgct
gcacggagcctggtggacaaagaaaaaggtatctcccttcgtttccctccgttcattcgt
gtccgtggagacaagcagccagagcaagccactaccagtgaccaggtggcctgtttatac
cggaagcagagtcagattcagaaccagcaaagctcagacgtggactccgactttgaggac
tgctattaa

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