Microtus oregoni (creeping vole): 121441438
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Entry
121441438 CDS
T08307
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg04151
PI3K-Akt signaling pathway
morg04510
Focal adhesion
morg04512
ECM-receptor interaction
morg04974
Protein digestion and absorption
morg05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
121441438 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121441438 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121441438 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
121441438 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
121441438 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
morg00536
]
121441438 (Col2a1)
Glycosaminoglycan binding proteins [BR:
morg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121441438 (Col2a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
121441438
NCBI-ProteinID:
XP_041498508
LinkDB
All DBs
Position
Unknown
AA seq
1418 aa
AA seq
DB search
MIRLGAPQSLVLLTLLIAAVLRCQGQDAGQLGPKGQKGEPGDIKDIVGPKGPPGPQGPAG
EQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGLPGLTGNFAAQMAGGFDE
KAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPAG
KPGDDGEAGKPGKAGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG
ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG
APGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG
APGFPGPRGPPGPQGATGPLGPKGQMGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEG
KRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG
RPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKG
ANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPG
PPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARGLPGTPGTDG
PKGAPGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG
PIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG
DQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG
SNGNPGPPGPPGPSGKDGPKGARGDTGSPGRAGDPGLQGPAGPSGEKGEPGDDGPPGSDG
PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG
PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGPTGKQGDRG
ESGAQGPMGPSGPAGARGIPGPQGPRGDKGESGEPGERGLKGHRGFTGLQGLPGPPGPSG
DQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGPPGNPGPPG
PPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAASSLRQHDVEVDATLKSLNNQIESI
RSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPA
TVPKKNWWSSKGKEKKHVWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLLSFEGSQNI
TYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTKHTGKWGKTV
IEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagtcgctggtactgctgacgctgctcatcgccgcggtc
cttcggtgtcaaggccaggacgccggacaactaggcccaaagggccagaaaggagaacct
ggagacatcaaggatatcgtaggacccaaaggaccgcctggccctcagggacctgctggt
gaacaaggacccagaggcgatcgtggtgacaagggagaaaagggtgcacctggacctcgt
ggccgagatggagagcctggtacccctggaaatcccggtccccctggccccccaggcccc
cctggtctccctggccttactggaaacttcgccgcccagatggctggaggctttgatgag
aaggctggaggtgcccagatgggagtgatgcaaggtccgatgggccctatgggacctcga
ggacccccaggccctgccggtgcccctggccctcaaggatttcaaggcaatcctggtgaa
cctggcgagcctggtgtctctggtcccatgggtccccgtggtcctccaggccctgctgga
aaacctggtgatgatggtgaagctgggaaacctggaaaagctggggaaagaggccttcct
ggccctcagggtgctcgtggattccctggaaccccaggccttcctggtgtcaaaggtcac
agaggttacccagggctcgatggtgctaagggagaagctggtgctccaggtgtgaagggc
gagagcggttctcctggtgagaatgggtcccccggcccaatgggtccccgaggcctgcct
ggtgagagaggacggactggtcctgctggtgctgccggtgctcggggcaacgatggccag
ccaggtcctgctgggcctccgggtcctgtcggtcctgcaggtggtcctggcttccctgga
gctcctggtgctaagggagaagctggccccactggtgctcgtggtcctgaaggtgctcaa
ggtcctcgtggcgaacctggcaaccctgggtcccctgggcccgcaggtgcttctggtaac
ccaggaacggatggcatccccggagccaaaggatctgctggtgctcctggaattgctggt
gcccctggtttcccagggccccgtggtcctcctggtccccaaggtgcaactggtcctctg
ggccccaaaggtcagatgggcgagcctggcattgctggcttcaaaggtgaacaaggcccc
aagggagaaactggtcctgctgggccccagggagcccctggtcctgctggtgaggaaggt
aaaagaggcgctcgaggagaacctggcggtgctgggcccatcggtccccctggagaaaga
ggcgcccctggtaaccgtggttttcccggtcaagatggtctggcaggtcccaagggtgct
cctggagaacgagggcctagtggcctggctggtcccaagggagccaatggtgaccctggt
cgtcctggagaacctggccttcctggagcccggggtcttacgggtcgtcctggtgatgcc
ggtcctcaaggcaaagtcggtccttctggagcccctggtgaagatggtcgtcctggacct
cctggtcctcagggagctcgtgggcagcctggtgtcatgggtttccctggccccaaaggt
gccaacggcgagcctggcaaagctggtgagaagggactggctggtgctcctggtctgaga
ggtctgcctggcaaagatggtgagacaggtgccgcaggaccccctggccctgccggacct
gctggtgaacgaggcgagcagggtgctcctgggccatcaggattccagggacttcctggc
cctcccggtcccccaggtgaaggtggaaaacaaggtgaccagggtattcctggtgaagct
ggagctcctggccttgtgggtcccaggggtgaacgaggtttcccaggtgaacgtggatct
cctggtgcacaaggcctccagggtgctcgtggtctccctggtactcctggtactgatggt
cccaaaggtgcacctggtccagatggcccccctggggctcagggtcctccaggtctacaa
ggaatgcctggcgagaggggagcagctggtattgctgggcccaagggagacagaggcgac
gttggtgagaaaggcccagagggggctcctggaaaagatggtggacgaggtctgactggg
cccattgggcccccgggcccggcaggtgccaatggcgagaagggagaagttggacctcct
ggcccttcaggaagtactggtgctcgtggcgctccgggtgaacgtggagaaactgggcca
cctggacctgctggatttgctgggcctcctggtgctgatggccagcctggtgccaagggt
gatcaaggagaggccgggcagaaaggagatgctggtgcccctggcccccaaggcccctct
ggagctcctgggccacagggtcctactggagtgactggtccgaagggagcccgaggcgca
caaggccccccaggagccaccggattccccggagctgctggccgagttggaccgccaggc
tctaatggcaaccctggaccccccggtccccctggtccttctggaaaagatggccccaaa
ggtgctcgaggagacacaggttcccctggccgagctggtgaccctggacttcaaggccct
gcaggaccttctggcgagaaaggagaacctggagatgacggtccccctggttctgacggt
cctccaggtccccaggggctggctggtcaaaggggcattgttggtcttcctggacagcgt
ggtgagagaggatttcctggccttcctggcccatcgggtgagcctggcaagcagggtgca
cctggtgcatctggagacagaggtcctcctggccccgtggggcctcctggcctgacaggt
cctgcaggtgaacctggacgagagggcagccctggtgctgatggaccccctggcagagat
ggtgcagctggagtcaagggtgatcgtggagagactggtgcactgggtgctcctggagct
cccgggcccccaggttctcctggccctgctggcccaactggcaaacaaggagacagagga
gagtctggtgcacaaggtcctatgggcccctcaggacctgctggagcccgtggaatccca
ggccctcaaggcccccgaggtgacaaaggagaatctggagagcctggcgagaggggattg
aagggacaccgaggcttcactggacttcagggtctgcctggccctccgggtccctctgga
gatcaaggtgcttctggcccagctggtccctctggccctagaggtccacctggccccgtt
ggtccctccggcaaagatggctctaatggaatccctggccccattgggcctcctggtccc
cgtggacgttcaggcgaaacaggccctgctggtcctcccggaaatcctggtccccctggc
cctccaggtcctcctggtcccggcattgacatgtcagccttcgctggcttaggtcagaga
gagaagggccctgatcccctgcagtacatgcgggccgatgaggcagccagctccctgcga
cagcacgatgtggaggtggatgccaccctcaagtcactcaataaccagattgagagcatc
cgcagccctgatggctcccgcaagaatcccgctcggacctgccaggacctgaaactgtgc
catccagagtggaagagcggagactactggattgaccccaaccagggctgtaccttggac
gctatgaaagtgttctgcaacatggagacaggagagacttgcgtctaccccaacccagcg
acggtgcctaagaagaactggtggagcagcaagggcaaggagaagaagcatgtctggttt
ggagaaaccatgaatggtggcttccacttcagctacggtgatggcaacttggctcccaac
accgctaacgtccagatgaccttccttcgtctactgtccttcgagggctctcagaacatc
acttaccactgtaagaacagcatcgcctacctggacgaagccgccggcaacctcaagaag
gccctgctcatccagggctccaatgatgtggagatgagggctgagggcaacagcaggttc
acgtacacggccctgaaggacggctgcacgaaacataccggtaagtggggcaagactgtc
atcgagtaccggtcacagaagacctcacgccttcccattgttgacattgcacccatggac
ataggaggccctgagcaggagtttggtgtggacatagggcctgtctgcttcttgtaa
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