Microtus oregoni (creeping vole): 121448220
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Entry
121448220 CDS
T08307
Symbol
Snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121448220 (Snrnp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
morg03041
]
121448220 (Snrnp40)
Spliceosome [BR:
morg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121448220 (Snrnp40)
Complex C
U5 SnRNP specific factors
121448220 (Snrnp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_NWD2_C
Beta-prop_RIG_1st
Cytochrom_D1
WD40_like
WDR54
Beta-prop_Nup120_160
PROPPIN
Motif
Other DBs
NCBI-GeneID:
121448220
NCBI-ProteinID:
XP_041507978
LinkDB
All DBs
Position
Unknown
AA seq
358 aa
AA seq
DB search
MIEQPKRKGPELPLVPVKRPRHELLLGAAGSGPGAGQQQATPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASSGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPVILSASSDKRLYMGEIQ
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcagccgaagcgcaaaggcccggagctaccactggttcctgtcaagcggccg
cggcatgagttgctgttgggagcggcggggtccggccccggagccggacagcagcaggcg
actccgggagctttgctacaagcggggcctccgaggtgttcgtccctgcaagccccaatc
atgctgctctcgggacacgaaggagaagtgtactgctgcaagtttcaccccaatggatcc
accttggcatcgtcaggatttgaccgactcatattattgtggaatgtctatggtgactgt
gataactatgctacattgaagggacacagtggcgcagtgatggaactgcattataacaca
gatggcagcatgctcttctcagcatcgacagataagacggtggctgtgtgggatagtgaa
acaggcgagagggtgaagaggctgaaggggcatacgtcctttgtgaactcctgttaccca
gcccggcggggcccccagctcgtctgcactggcagcgatgacggcacagttaagctgtgg
gacatccgcaagaaagcagctatccagacatttcagaacacttaccaggtgctggctgtg
accttcaatgacacaagcgatcagattatctctggtggaatagacaatgatatcaaggtt
tgggacctgcgtcaaaacaaattaacctacaccatgagaggccatgcagattctgtaact
ggcttgagtttaagttctgagggatcttatctcttgtccaatgcaatggacaatacagtg
cgtgtctgggatgtccggccctttgctcccaaagaaagatgtgtgaagatatttcaagga
aatgtgcacaactttgagaagaacctcctgcggtgttcttggtcacctgatggaagcaag
atagctgctggctcagcggacaggtttgtgtacgtgtgggatactacgagcaggaggatc
ctgtataagctgcctggccatgctggctccatcaatgaagtggcgttccaccctgatgag
cctgtcatcctctcagcatccagtgacaagaggctgtatatgggtgagattcagtga
DBGET
integrated database retrieval system
