Microtus oregoni (creeping vole): 121454192
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Entry
121454192 CDS
T08307
Symbol
Vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
morg
Microtus oregoni (creeping vole)
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
morg04131
]
121454192 (Vps13a)
Membrane trafficking [BR:
morg04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
121454192 (Vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
121454192
NCBI-ProteinID:
XP_041517354
LinkDB
All DBs
Position
Unknown
AA seq
3168 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDKSQLSLGIWKGAVVLKNLEIKENALSELDVPFKVKVG
HIGSLTLKIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPIKEEKQLMEAKQQELKRIED
AKQKVVDQENPPEEKQDTFSEKLITQIIKNLQVKISNIHVRYEDDITNQDKPLSFGISLQ
NLSMQTTDQNWIPCLHDETEKLVRKLIRLDNLFAYWNVKSQMYYLNDYDESLVVLKNGIV
NENIVPDGYDFVFRPISANAKLQMNRRSDFDFSDPKINLDVELHTIVIEFNKPQYFSLME
LLESIDMMTQNLPYRKFKPSVPLHYHAKEWWAYAIHGILEVNVCPRLRMWSWKHIRDHRQ
KVKQYRESYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEVKKAGYKIYKEG
VKDPEDNAGWFSWLWTWSESNAKQQLEVKPGILEEMLTPEEKVLLYEAIGYSETAVDPTL
PKTFEALKFFVHLKSMSVILRENHQKPELVNIIVEGLSTLIVQRPGAQAIKFETKIDSFY
ITGLPDNSRKPHLLSSLDDMSLFQITFETNPLDETVAQRCIIEAEPLEIIYDARTVNSIV
EFFRPPKDVHLAQLTSATLTKLEEFRDKTATGLLYIIETQKVLDLRINVKASYVIVPQYG
IFSPTSNLLLLDLGHLKVTSKSRSGLSEMKPSNTSLEEIMHRAYDSFDIQLTSIQLLYSR
VGDNWKEARKLNVSTQHILTPMHVNVELSKAMVFMDIKMPKFKISGKLPLISLRISDKKL
QGIMELFDSIPKPEPITDLSAPAKSFQIQASTLPASQISQKLIPLLEQPSVAEDDSEEEF
FDAPCSPLEEYPQILSRVRSPRPKKLQKKECSVNLIQLRMRFEVAEVLIQFYHLVGDCEL
PVLETGVLGLGTEVEIRTFDLKANAFLKEFWLKCPEYLDENKKPIYLITTLDNTMEDLLT
LEFVRVEKNAPSLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNTLPQLGEQSAS
VSVAETEDKGDLIKMLALKLPTNEDTITLQLLAELSCLRIFIQDQKQNISEIKIEGLDSE
MIMKPLVTEINAKLRNIIVLDSDKMAVYKKAVYITGKEVFSFKMISYMNATAGSAYTDMN
VVDVQVNLTVGCIEVVFVTKFLYSILAFIDNFQAVKNALAEATAQAAGMAADGVMELARR
SSRLALDVNIKAPIVVIPQSPVSHNVFVADFGLITMKNTFFTVTETQSNPPPVIDLITIK
LSEMRLYRSQFMTTAYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCLNIKAQLKPMEFIL
SQEDLTTIFQTLYGNIWYGRDVSVPSSISKDNEIMTSGANHVSNHSGGTMVTAAVVEVHP
QASQVNTTLNVSFRTDYLTMALYSPGPEQAFFTDVRDPSLKLAEFKLENIISSLKLYTDG
STFCSFSLKNCILDDKRPHVIKATPRMIGLTLGFDKKDMVDVKYRRIRDAFVTDAVVQEM
YVCASVEFLMTVAHVFFDAYMTSTALETSVQAWTTKEEPAQDLGKWEINILIKNPEIVFV
ADMTRNDAPALVITTQCEICCKGDPESNTVTAAIKDLQVRACPFLPAKRKGKITTVLQPC
DLFYQATQIGTDPQIIDISVKSLTLKVSPVIINTIITITSALYTTKETIPEENTSSIAHL
WDKQDTKNLKMWFLEESNETEKVVPSNELIPGGETLNLNIDSIFIVLEAGIGHRTVPMLL
AKARFLGESKNWSTLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTDDFRPWNLGIKM
KKKAKESIVESDSEEENYKVPEYKTVISFYSKDQLNITLSKCGLVMLNNLVEAFTEAATG
SSAVFLRDLAPFMILNSLGLTVSVSPSDSFNVLNVPMAKSYELKNEESLSMDYVRTKDSD
HFSAMTSLSSKLFFIILTPVNHSAADKIPLTKVGRRLYTVRHRESGVERSIVCQIDTVEG
SKKVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLASYRSSLSLKPDDEDYQM
CEGIDFEEIIKYDGQLLRKKCKSIHASKRSFVINIVPEKDNLTSLSVYSEDGWDLPYVMH
LWPPILIRNLLPYKIAYYLEGIENTVFTLSEGHSSQIYNVEMDKAKLHLKLLDYLNHDWK
SEFHIKPNQQDINFINFTCLTEMEKTDLDIAIHMTYNTGQTIVAFHSPYWMVNKTDRMLQ
YKADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCK
GLKMEYQVGVTINLSSFNITRIVVFTPFYMIKNKSKYHISVAEEGSDKWLSLDLDQCIPF
WPEDASNILLIQVERSEGPPKRIHFNKQDNCILLRLNNELGGIIAEVNLAEHSTVITFSD
YHDGAATFLLINHTKNDLVQYKQSSLSEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSH
GEVTHKDDMMTPISVGKKTIYLVSFFEGLQRIILFTEDPKVFKVTYESEKAELAEQEIVL
ALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWRPMSIKHTEKLEKEFKEYTE
SSPLEDKVIELDNNIPVRLTPSGNDMKILQPHVIAVRRNYLPALKVEYNTSAHQSSFRIQ
IYRIQIQNQIHGAIFPFVFYPIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKV
LIQEMDLRLDLGFVYAIADLVTKAEVTENTEVEYFHKDVETFEQEYETVSSVDQSQINLF
EYFHISPIKLHLSVSLSSGREEAKDSGQRGGLIPVHSLNLLLKSIGATLTDVQDVVFKLA
FIELNYQFRTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYE
PYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRR
EAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAV
ARPTGGIIDMASSTFQGIKRATETFEVESLRPPRFFNEDGVIRPYRLREGTGNQMLQVME
NGRFAKYKYFTHVMINKTDMFMITRSGVLFVTKGTFGQLTCEWQYSFDEFTKEPFIVHGR
RLRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPSL
NT seq
9507 nt
NT seq
+upstream
nt +downstream
nt
atggtatttgagtccttggtcgtggacgtgttgaaccggttcctgggcgactatgtggtg
aacctggacaagtctcagctctctctgggcatttggaaaggagctgtggtcctcaagaac
cttgaaattaaagaaaatgcattgagtgaattggatgtaccattcaaagttaaggttggt
catataggtagtcttacacttaaaattccatggaaaaatctttatactcaaccagttgaa
gctgttttggaagaaatctatttacttatagtgccttcttctagaataaaatatgatcct
atcaaagaagaaaagcaactcatggaagcaaagcagcaggaactaaaaagaatagaagat
gcaaagcagaaagtagttgatcaagaaaatcctccggaggagaaacaggacactttttca
gaaaaattaattactcaaatcataaaaaatcttcaagtgaaaatttccaatatccatgtt
cgttatgaagatgatatcacaaatcaagacaaaccactctcgtttggtatttcccttcaa
aatctcagcatgcagacaactgatcaaaattggattccatgtttacatgatgaaactgaa
aaactagttcgtaagctaatccgattagataatctctttgcttactggaatgtgaagtct
cagatgtattatctgaatgattatgatgaatcattggtagtcttgaaaaatggtattgtc
aatgaaaatattgtcccagatggttatgactttgtttttcgacctatatctgctaatgcc
aagcttcagatgaaccggcgatcagattttgacttttctgaccccaaaataaacctggac
gttgagctacataccatagtgattgagtttaataaaccacagtatttcagtctcatggag
ctcctcgagtccattgacatgatgacacaaaacctgccctacagaaagttcaagcccagc
gtgcctcttcactaccatgccaaagaatggtgggcttatgctatacacggtattcttgaa
gtaaatgtttgtcctcgtttacggatgtggtcttggaagcatattagagaccataggcaa
aaagtgaaacaatatagagaatcttataagaaaaagttaacaagtaagaagccatctcct
gaaattctcatgtctttggaggagttggagaaaaccttggatgtttttaatataaccata
gctagacaacaggcagaagttgaggtaaagaaagctggatacaagatttacaaagaagga
gtaaaagatccagaggataatgcaggatggtttagctggctgtggacgtggtcagaatca
aatgctaaacaacaactagaagttaaacctggaattcttgaagaaatgttgacacctgaa
gaaaaagttttgctttatgaagcaattggttatagtgaaacagcagttgatccaaccttg
ccaaaaacatttgaagccttgaagttttttgttcacttgaaaagtatgtctgttattcta
agagaaaatcaccaaaaaccggagctggtaaacattatagtagaaggacttagtactttg
attgtgcaaaggccaggagcacaagccataaaatttgaaaccaaaattgattcattttat
attactggccttccagataattcaagaaaaccccacctactgtcttcattggacgatatg
tcactcttccagattacatttgagacgaatcctttagatgaaactgttgctcagaggtgt
atcatagaggctgagcctttagagataatatacgatgcaaggacagtcaatagtatagtg
gagttcttcagacccccaaaagacgtccacctagcacaacttacctcagcaactttgaca
aaacttgaagaatttcgagataaaacagcaacaggtttgctgtatattattgaaacacag
aaagttcttgatctcagaattaatgtgaaggcttcatatgttattgtcccacagtatgga
atttttagccccacatcaaatctacttcttttggatcttggtcatttaaaggtgacaagt
aaaagtcgatcaggattatcagaaatgaaaccaagtaacactagcctcgaagagataatg
catagagcttatgattcctttgatattcagcttacaagcatacagttgctttacagcaga
gtgggtgataactggaaagaagcacgaaagctcaatgtatcaacacagcatattttgaca
cctatgcacgtcaatgtagaactctctaaagccatggttttcatggatatcaagatgccc
aaattcaagatttctggaaaattacctcttatttcattacgaatctcagataaaaaacta
caagggattatggaattgtttgatagcattccaaaacctgaacccataactgatctgtct
gcccctgccaaatcattccagattcaagcatctactttgccagcatcacagatttctcag
aagttaatccctttattggaacagccttctgttgccgaagatgattcagaggaagaattt
tttgatgcaccatgtagtcccttggaagagtatcctcaaatcctatctagagttagaagt
cctcgacccaaaaaattacaaaagaaagagtgttcagtgaatttaattcaacttaggatg
cgatttgaagtagcagaggttttgattcagttttatcaccttgtgggagactgtgaacta
cccgtgctagaaacgggtgttttaggattgggtactgaagttgagattagaacatttgat
ttgaaagcaaacgcctttttgaaagagttctggttaaaatgtccagaatacttagatgaa
aacaagaaaccaatttatttgatcaccaccctggataacacaatggaagatttgttaaca
ctggaatttgtgagggtcgaaaaaaatgcacccagtttaaaaagtacttacaacaatgtt
ttacaacttattaaggtgaatttttcctctttggatattcatttacacactgaagcactt
ctcaatacaatgaattatcttaataatacccttccgcaattaggggaacaatctgcctca
gtgtctgttgcagagactgaagacaaaggagatctcattaaaatgcttgctttaaagcta
cccacgaatgaagatactattaccttgcaacttttggctgaattgtcttgtttacggatt
tttattcaagatcagaaacaaaacatttctgaaattaagattgaagggcttgattctgag
atgattatgaagccattagtcactgaaataaatgcaaaactaaggaatataattgtgtta
gattctgataaaatggctgtatacaaaaaggctgtttatatcactggaaaggaagttttc
agcttcaaaatgatttcttacatgaatgcaactgcaggctctgcatacacagatatgaat
gtggttgatgttcaagttaatttaactgttggttgcattgaagtcgtgtttgtcacaaaa
ttcctatattctatattggcttttatagataattttcaagcagttaaaaatgcgttggct
gaagcaactgctcaagcggcaggaatggctgctgatggtgtaatggaactggctcgaagg
agttctaggctcgcattggatgttaacataaaagcccctattgtggtcatcccgcagtct
ccagtgtctcacaatgtttttgttgctgattttggcttaattacaatgaaaaatacattt
tttactgtaacagaaacccagagtaatcccccacctgtaattgatttgataacaataaaa
ttgagtgaaatgagactatacaggtctcagtttatgactactgcataccaggaagtgctt
gacctgctactacctttgaacctggaagtgattgttgaacgaaacttatcctgggaatgg
tacaaggaagttccttgtttaaatataaaagctcagctaaaacccatggagttcattctt
agtcaagaagatttaacaaccatctttcaaacattatatggcaatatatggtatggacga
gatgtttctgtcccatcttctataagtaaagacaacgaaatcatgactagtggagcaaac
catgtttccaaccattcaggaggtaccatggtaacagctgctgtggtggaagtccacccc
caggcctctcaggttaacactactctgaacgttagtttcaggactgattacctcaccatg
gcactttacagtccagggcctgaacaggccttctttacagatgttcgtgatccttctctg
aaacttgctgaatttaaattggagaatattataagtagtttgaaactgtatacagatggc
tctacattctgttcattctcattaaaaaactgtattttagatgataaaaggcctcatgtc
ataaaagccacacctagaatgataggactgacacttgggtttgacaaaaaggacatggtg
gatgtaaagtatagaagaatcagagatgcttttgtgactgacgcagttgtgcaagagatg
tatgtttgtgcaagtgtggagtttctgatgactgttgcacatgtcttttttgatgcctac
atgactagtacggctttagaaaccagtgtccaagcatggactactaaagaagaacctgca
caggatttagggaagtgggaaataaatattctaataaaaaaccctgagattgtctttgtg
gctgacatgacaaggaatgatgctcctgcgttagtcattacaacacagtgtgaaatttgc
tgtaaaggtgaccctgaaagcaatacagtaacagctgctattaaagatctccaagtcaga
gcatgcccatttcttccagccaagagaaagggcaaaatcaccactgttttacagccttgt
gacttgttttatcaggctactcagataggaactgatccacaaataattgacatatcagta
aaatctcttacactaaaggtttcaccagttatcataaataccataataactattacttca
gcactttatacaactaaggaaacaatcccagaagaaaacacctcttccatagcacattta
tgggacaagcaggatactaagaatctgaaaatgtggtttcttgaagaatccaatgaaaca
gaaaaagtagttccatcaaatgaattgattccaggaggagagacactgaacttgaatatt
gattctatttttatagttctcgaagctggaattggtcatagaacagtgccgatgctgttg
gcaaaggcacgctttttgggggaaagcaaaaactggagtactttaataaatctccactgt
cagcttgagctggaagttcactactataacgaaatgtttggtgtttgggaacctttactg
gaacccttagaaattgatcagactgatgattttagaccatggaatcttggaatcaagatg
aaaaagaaagcaaaagagtccatcgttgagtcagatagtgaagaagaaaactacaaagta
ccagaatataaaactgttataagtttttattctaaagaccaattaaatattacattatcc
aagtgtggccttgtgatgttaaataatttagtcgaggcatttactgaagctgctactgga
tcgtcagctgtcttcctaagagatctagcaccatttatgattttaaattctcttggactt
actgtctctgtttcaccaagtgattcttttaatgtacttaatgttcctatggcaaaatca
tatgagctgaaaaatgaagagagtttaagtatggattatgtacgaactaaggacagtgat
catttcagtgcaatgaccagcctaagcagcaaactcttcttcattatcctcacacctgtt
aaccactctgctgctgacaagattccgttaacaaaagtgggacggcgtctgtatacagta
agacacagggagtctggagttgaaagatctattgtttgtcaaattgacacagttgaagga
agtaagaaggtaacaatccgctcaccagtgcagattaagaatcatttttcaattccaatt
tccgtttttgaaggggatacgttattaggaattgcttcacctgaaaatgaattcaacata
ccattagcatcttaccgatcatcgctttctttgaagccagatgatgaggactaccaaatg
tgtgaaggaattgactttgaagaaatcataaaatatgatggacaacttctaaggaagaaa
tgcaaatctatacacgcttctaagagatcatttgttattaatattgtcccagaaaaagat
aatttgacttctctgtcagtgtattcagaagacggctgggacttaccatatgtaatgcac
ttgtggccacctatcctcattcggaatcttcttccctacaaaattgcttattacctagag
ggcattgaaaacacagtttttaccttaagtgaaggacattcatcacaaatttataatgtt
gaaatggacaaagccaagctgcacttaaaattgcttgactatcttaatcatgattggaaa
agtgaatttcatataaaacctaatcaacaagacatcaatttcatcaactttacctgtctc
acagaaatggaaaagactgatttggatattgctatccacatgacttacaatactggtcag
acaattgtggcatttcacagtccatattggatggtcaataaaactgatcggatgttacag
tacaaagcagatggaatccaccgaaagcatccacctaattataaaaagccagttctcttt
tcctttcagccaaaccacttttttaacaataataaggttcagcttatggtaactgacagt
gagctctctgatcagttctcaattgatactgttggtagtcatggagccattaaatgcaaa
ggcctgaaaatggaataccaagttggtgtcactataaacctcagcagttttaatattacc
agaattgtggtatttactcctttttatatgattaaaaataaaagcaaataccatatatca
gtggcagaagaaggaagtgataaatggctctctcttgacttagatcagtgtatccctttc
tggcctgaggatgcctccaatattcttctcattcaagttgaaagaagtgaaggtcccccc
aaacggatacattttaacaagcaagacaattgtattttattacgactgaataatgagctt
ggaggaattattgcagaagttaatttggctgagcactctacagttattacattttcagat
taccatgacggtgcagctacattcctactaataaatcataccaagaatgaccttgttcag
tacaagcagagttctctcagtgaaatagaagattcccttcctcctggaaaagcagtatat
tatacatgggctgatccagtgggttctagaaagctgaagtggagttgtgggcaaagtcat
ggtgaagtaacacataaggatgatatgatgacccctataagtgtggggaaaaaaaccatt
tatttagtgtcattctttgaaggtttgcagcgtattattctattcactgaagacccaaaa
gtgtttaaagtaacatatgaaagtgaaaaagcagagttagcagagcaagaaatcgtactg
gcattacaagatgttggaatttcacttgtcaataattatacaaaacaagaagtagcctat
ataggcattacaagttctgatgtggtttgggagacaaaaccaaagaaaaaagcaaggtgg
aggccaatgagtataaaacacactgagaagctggagaaggagttcaaggaatacacagaa
tcttcacctttggaagacaaggttattgagttggacaataacattccggttcgcttaaca
cctagtggcaatgacatgaaaattctgcagccacatgtgatagctgtacggagaaattac
ctcccagcactaaaagtagaatataacacatctgcacaccagtcatcgttcagaattcag
atttatagaatacagatccaaaaccagattcatggtgctatttttcctttcgtgttttat
cctattaaaccgccaaagtctgtcaccatggactcagcaccaaagccctttacagatgtt
agcattgtcatgagatctgcaggacattcccaaatatcacgcattaagtatttcaaagtg
ttgattcaagaaatggatctcagattggatcttgggtttgtgtatgccatagcagacctt
gtcacaaaagctgaggtgactgagaacacagaggttgaatattttcataaggatgtagaa
acatttgaacaagaatatgaaacagtttcttcagtagatcaatctcaaatcaatctcttc
gagtatttccatatatctcctatcaagttgcatttgagtgtttcgttgagctctggtaga
gaagaagctaaagattcaggacaacgtggaggactgattcctgttcattctttaaatctt
ttgctgaagagtattggtgccacccttacagatgtacaagatgtagtttttaaacttgcc
tttattgaactcaactaccagttccgtacaacatctgaactgcaatctgaagtaataaga
cactattcaaaacaggctattaagcaaatgtatgtactcattctcggacttgatgttttg
ggaaatccctttggcttaattagagaattttcagaaggcgtagaagcatttttttatgaa
ccttaccagggagccatacagggtcctgaagagtttgtggagggaatggcactaggactg
aaagcactggttggcggagccgttggtgggctagctggtgctgcctccaaaatcaccagt
gcgatggctaaaggagtagcagccatgacgatggatgaagactaccagcagaaaagaagg
gaagcaatgaataaacagccagctggccttagagaaggcatcactcgtggaggaaaaggc
ctggtttctggttttgtaagtggcattacggggattgttacaaaaccaattaaaggtgct
caaaaggaaggcgcagcgggtttcttcaaaggcgtcgggaaaggtttagttggagcagtg
gcaaggccaacaggtggcatcatagacatggccagcagtacctttcaggggatcaaaaga
gctacagagacttttgaagtagaaagtttgcgacctccccggttctttaatgaagatgga
gttatccgaccttacaggctgagggagggtacaggaaatcaaatgttacaggtcatggaa
aatggaagatttgcaaaatacaagtattttacccatgtcatgatcaacaaaacagatatg
ttcatgataacgagaagtggtgtgttgtttgtaacaaagggaacatttggacaacttaca
tgtgaatggcagtatagttttgatgagtttaccaaagagccattcattgttcatgggaga
agattgcgtattgaagcaaaggaacgagtgaaatctgtatttcatgctaaagaatttggg
aaaataattaacttcaagactccagaggatgctaggtggattctgacaaagctggaagaa
gcaagagaaccatctccgagcctgtga
DBGET
integrated database retrieval system
