Microtus oregoni (creeping vole): 121454938
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Entry
121454938 CDS
T08307
Symbol
Rc3h1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
morg
Microtus oregoni (creeping vole)
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
morg03000
]
121454938 (Rc3h1)
04121 Ubiquitin system [BR:
morg04121
]
121454938 (Rc3h1)
Transcription factors [BR:
morg03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
121454938 (Rc3h1)
Ubiquitin system [BR:
morg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121454938 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf_CCCH_4
FYVE
zf-C3HC4_2
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
TPD52
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
121454938
NCBI-ProteinID:
XP_041518277
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQIPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAPMLPDE
SAVDLSSRKPPALPNGIVSAGSTVTQLIPRGTDPSFDSSLKPGKLDHLSSSAPGSPPDLL
ESAPKSISALPVNPHPVPPRGPTDLPPMSVTKPIQMVPRGSQLYPAQQADVYYQDPRGTA
PAFEPPPYQQGMYYTPPPCVSRFVRPPPSAPEPGPPYLDHYPPYLQDRVINSQYGTQPQQ
YPPMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPSAAVPSYVPESRERYQQVEGYYPV
APHPAQIRPSYPRDPSYSRLPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTL
PPAFHQEEFLDEEFKIAGKYKANDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMN
VESKGMRDQRLELQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPMQAIAPQ
GAPTKPISISDYSSYGAHGGWGDSPYSPHPNIPPQGHFIEREKISMAEVTSHGKTLLSAE
REQLRLELQQLNHQISQQTQLRGLEAVNNRLVVQREVNTLAGQPQPSPLPPKWPGMISSE
QLSLELHQVEREIGKRTRELSMENQCPMDMKNKLGTSKQTENGQPEPQNKVPAEDLALTF
SDVPNGSALTQENLSLLSNKTSSLNLSEDSEGGGDNKDSQRSGVTSSSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctttcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaaaatg
tgcctgaataaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgagctccttcctgtgaactcagcattactgcagctagtgggtgctcagatccctgag
caacagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagccttgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcaaaggaagcttgtgactcta
gtccactgccagctagtggaagaagaaggaaggatccgtgctatgagggctgctcgatct
ttaggtgaacgcacagttacagagctcattctccagcaccaaaatcctcagcagctctcc
tctaatctctgggcagcagtcagagctaggggctgccagttccttggaccagcaatgcag
gaggaggcactgaagcttgtcttgctggccttggaagatggttctgctttgtcacggaaa
gtgttggttctctttgtggtacaaagactggaaccacgttttcctcaagcctctaaaacc
agcattggacatgttgttcagctcctttacagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaagaagaatttaggacttatgaagctctgcga
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttaagaattgcacca
gaccagtggtcctctttgctttatggagaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagacccctgcctcctttgcacagagtgttcaggagctaacaattgct
ctccagcgaactggagacccagcaaacttgaaccgactaagaccccacttggagctacta
gcaaacattgaccctagtccagatgctcctcctccaacatgggaacagttagaaaatggc
ctggttgctgtacgtacagtagtacatggactggttgattatattcagaaccacagtaaa
aaaggagcagaccaacagcagcctccacaacatagcaaatacaaaacatacatgtgtcga
gatatgaagcagaggggaggatgccctcgtggggccagctgtacctttgcacactcacaa
gaagaactggaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcacccatgcttcctgatgaa
agtgcagtggatttgtcgagcaggaaacctcctgcgcttccaaatggaattgtatcagca
gggagcacagtgacacagctgattccacgtgggacagaccccagctttgattctagtctg
aagccaggaaaattagaccacctgagcagcagtgctcctgggtcccctcctgacctgctg
gaatctgcccctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
gggccaacagatctgcctcctatgtctgtcaccaaaccaatacagatggtacctcgaggt
tctcagttgtatccagcacaacaagcggatgtttattaccaggatcctcgaggaactgcc
ccagcatttgagccaccaccttatcagcagggtatgtactatactccaccaccatgtgtg
tcccgctttgtccgacctccaccatctgctcctgaacctggtccgccatacttggatcat
tatccaccctacctccaagatcgtgtcataaactctcagtatggcacacaaccacaacag
taccctcctatgtacccacctcactatgatggccgccgtgtgtaccctgctcagtcttac
acaagagaggagattttccgggaaagcccaatacccattgagattccatctgcagcagta
ccatcctatgtgcccgagtccagagaacgataccaacaggtagagggttactatccagtg
gcccctcatccagctcagatcagaccttcataccccagggatccttcttatagtcgactt
cctcctccccaaccccatcctagcctggatgagctacatcgcagacggaaggaaataatg
gcccagctcgaggaaagaaaggttatctctccacctccttttgcaccttcaccaacattg
cctcctgcgttccatcaagaagaatttttggatgaagaattcaagatagctgggaaatat
aaagcaaatgattatagccaatattctccttggtcatgtgataccatcggctcctacatt
ggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatgatgaat
gtagaaagtaaaggaatgagagaccagagattggaactccagagaagagcagtggaaact
agtgatgatgacctcatcccctttggagaccgaccaacagtatctcggtttggtgccatc
tctcgaacatccaaaacactgtatcagggtgctggcccaatgcaggctatagcacctcag
ggagcacccacaaaacctatcagcatttcagattacagttcatatggagctcatggtggc
tggggagattctccatactcacctcatccaaacatacctcctcagggacacttcatcgag
agggagaaaatatccatggcagaagtgaccagtcatggaaaaacccttctgtctgctgaa
agagaacaactacggttagaattgcagcaactgaaccatcagattagccagcagacccag
cttcgtggactagaggctgttaataaccgactggtggtacagagggaggtgaacaccctg
gcaggacagccacagccctctccactgcctccaaaatggcctggaatgatctcaagtgag
caattaagcttggaactacatcaggtggaaagggaaattggcaagagaacgcgggaattg
agtatggagaaccagtgtcctatggacatgaaaaataaactgggtacaagtaaacaaaca
gaaaatggacagccggagccacaaaacaaagtcccagctgaagaccttgcattgacattc
agtgatgtgccgaatggatcagctttgacacaggagaatctcagcctcctatcaaacaag
accagctccttgaacctgtcagaagactctgagggaggaggagataacaaagattcccag
agatcaggagttacttccagttctgctccctag
DBGET
integrated database retrieval system
