Microtus oregoni (creeping vole): 121458950
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Entry
121458950 CDS
T08307
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg04611
Platelet activation
morg04820
Cytoskeleton in muscle cells
morg04926
Relaxin signaling pathway
morg04933
AGE-RAGE signaling pathway in diabetic complications
morg04974
Protein digestion and absorption
morg05146
Amoebiasis
morg05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121458950
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
121458950
09152 Endocrine system
04926 Relaxin signaling pathway
121458950
09154 Digestive system
04974 Protein digestion and absorption
121458950
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
121458950
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
121458950
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
121458950
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
morg00536
]
121458950
Glycosaminoglycan binding proteins [BR:
morg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121458950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
121458950
NCBI-ProteinID:
XP_041524320
LinkDB
All DBs
Position
Unknown
AA seq
1464 aa
AA seq
DB search
MMSFVQSGAWLLLALLHPTCIWAQQGSVDESGCTHLGQTYESRDVWKPEPCQICVCDAGS
VLCDDIICDDAPLDCPNVEIPFGECCPICPQPTTPAPALPDGHGPRGPKGDPGPPGIPGR
NGDPGNPGLPGPPGSPGSPGICPSCPNGGQNYSPQYDSYDVKSGVGGGMSGYPGPPGPPG
PAGPPGSSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRPG
ERGLPGPPGAKGPSGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGAPGPMG
PRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG
SNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPGAPGLMGARGPPGPAG
TNGAPGQRGPSGEPGKNGAKGEPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGTNGQPG
AAGERGAPGFRGPAGPNGIPGEKGPAGERGGPGPAGPRGVAGEPGRDGAPGGPGMRGVPG
SPGGPGNDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG
GPGLPGPAGKNGETGPQGPPGPTGPSGDKGDSGPPGPQGLQGIPGTSGPPGENGKPGEPG
PKGEVGAPGVPGGKGDSGAPGERGPPGVAGSPGPRGGAGPPGPEGGKGPAGPPGLAGATG
PPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGAPGKDGPRGPTGPIGPPGPAGQPGDKG
EGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPG
AAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGPSGAPG
KDGPPGPAGNSGSPGNPGIAGPKGDAGQPGEKGPPGAQGPPGSPGPLGLAGLTGARGLAG
PPGMPGPRGSPGPQGIKGESGKPGASGHNGERGPPGPQGLPGQPGTAGEPGRDGNPGSDG
QPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGEAGPAGPSGAPGPAG
ARGAPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGSPGAAGHQGAVGSPGPAGPRG
PVGPHGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGG
GVASLGGGEKSAGFAPYYGDEPMDFKINTEEIMSSLKSVNGQIESLISPDGSRKNPARNC
RDLKFCHPELTSGEYWVDPNQGCKMDAIKVFCNMETGETCINANPMTVPRKNWWTDSAAE
KKHVWFGESMDGGFQFSYGNPDLPEDVLDVQLAYLRLLSSRASQNITYHCKNSIAYMDQA
TGNVKKSLKLMGSNEGEFKAEGNSKFTYTVLEDGCAKHTGEWSKTVFEYRTRKALRLPII
DIAPYDIGGPDQEFGVDVGPVCFL
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaagtggggcctggcttctccttgccctgctccatcccacttgc
atttgggcacaacagggcagtgttgatgaatcgggatgcacccaccttggtcagacctat
gagtctagagatgtttggaaaccagagccatgccaaatatgtgtctgcgacgccggatct
gtcctctgcgatgacatcatatgcgatgatgctccgctagactgccccaacgtagagatc
ccgtttggagaatgttgtccaatatgcccacagcctaccacacctgctcctgcccttcct
gatggccatggaccacgaggccccaagggagatccaggccctcctggaattcctgggaga
aatggtgaccccggcaatccagggctaccaggtccccctggctctcctggctctcctgga
atctgtccatcatgtccaaatggcggtcagaattattctccccagtatgactcctacgat
gtcaagtctggagttggaggaggaatgagtggctatcccggaccacctggtcccccaggc
cctgcaggcccccctggctcttctggacatcctggctcccctggttctcctggataccaa
ggtccccctggtgaacctggtcaagctggtcctgccggccctccaggacctcctggtgct
attggtccatctggccctgctggaaaggatggagagtcagggagacctggtcgacctgga
gagcgtggactacctggccctccgggtgctaaaggcccaagcggcatgcctggattccct
gggatgaaagggcacagaggttttgatggacgaaacggagagaagggtgaaacgggtgct
cctggactgaagggtgaaaacggtcttcctggagacaatggagctcctggccccatgggt
cccagaggggctcccggtgagcgaggacgtccaggccttcctggagctgcaggtgctcga
ggcaatgacggtgctcggggcagtgatggacaaccaggtccccctggtcctcctggaacg
gcagggttccctgggtcccccggtgctaagggtgaagttggacctgcagggtcccctggt
tcaaatggctccccaggacaacgaggtgaacctggaccacagggacacgctggtgctcaa
gggcctcctggccctcctgggaataatggcagtcctggcggcaaaggtgaaatgggtccc
gctggcattcctggagctcctggactaatgggagctaggggcccccctggaccagctggg
actaacggcgcacccggacagcgaggtccttcaggtgaacccggcaagaatggtgcaaaa
ggagagccaggtgcccgtggtgaacggggggaagctggatccccaggaatcccagggcct
aagggtgaagatggtaaagatggatcacctggagaacccggtacaaatgggcagccagga
gctgctggagaaaggggagctcctggcttcagaggacctgcagggccaaatggcatccca
ggagaaaagggtcctgctggggaacgtggtggcccaggtcctgcagggccccgaggagta
gctggagaacctggccgagatggagccccaggaggcccaggaatgaggggtgttcccgga
agcccaggaggaccaggcaatgatgggaaaccaggacctcccggaagtcaaggagaaagt
ggccgccctggtcctcctggcccatctggaccccggggtcagcctggtgtcatgggtttt
cctggtcctaaaggaaatgacggtgctcctggcaagaatggagaacggggtggccctgga
ggacccggccttcccggtcctgctggaaagaacggtgaaactggacctcagggcccccca
ggccctactggcccatctggtgacaagggcgattccggaccccctggtccacaaggatta
caaggaatacctggtaccagtggtcctccaggagaaaatggaaagcctggcgaaccaggt
ccaaagggtgaagttggtgcacctggagttcctggaggcaagggtgactccggtgcccct
ggagagcgtggaccacccggagttgcaggaagccctggtcctagaggcggagctggaccc
cctggccccgagggaggaaagggccctgctggtccccctggtctcgctggtgctactggt
ccccctggtctacaagggatgcctggagagagaggaggtcctgggagtcctggtccaaag
ggtgaaaagggtgaacccgggggtgcaggtgctgatggggctccaggaaaggatgggcca
aggggtcctactggtcctattggcccccctggcccagctggtcagcccggagataagggt
gaaggtggtgcccctggacttccgggtatagctggacctcgaggtggccctggcgagaga
ggtgaacatggacctcctggacctgctggcttcccgggagctcctggacagaatggtgaa
ccaggtgctaaaggagaaagaggcgcccctggagagaaaggtgaaggaggccctcctgga
gccgcaggaccccctggaggttccggacccgctggtcctcctggtcctcagggtgtcaag
ggtgaacgtggcagtcctggtggtcctggtgctgctggctttcctggtggtcgtggtctt
cctggtccccctggcaacaatggtaacccaggccccccagggccaagtggagctcctggc
aaggatggccctccagggcctgctgggaacagtggttctcctggcaaccctggaatagcg
ggaccaaaaggtgatgctggccaacctggagagaagggaccacctggtgctcagggacct
ccgggatccccaggcccactcggacttgcgggacttactggagcaagaggtcttgctggg
ccgccaggcatgccgggtcctaggggcagccctgggcctcaaggtatcaagggtgaaagt
ggaaaaccgggagccagtggccataatggggaacgtggtcctcctggaccccaaggtctt
cctggccaacctggtacagctggtgaacctgggagggatggaaacccaggatcagatggt
caaccaggacgagatggatcccctggtggcaagggtgatcgtggtgaaaatggttctcct
ggtgccccaggtgctcctggtcatccaggaccacctggtcctgttggtccagctgggaag
agtggtgaccgaggagaagcgggtcctgctggtccttctggtgctcctggtcctgctgga
gctcggggtgctcctggtccccaaggtccacgaggtgacaaaggtgaaaccggcgagcgt
ggctccaatggcatcaaaggacaccgaggattcccaggcaatccaggtcccccaggttcc
cctggtgctgccggtcaccagggtgcagttggtagtcccggacctgccggtcccagagga
ccagttggaccacatgggcctcctggaaaagatggtacaagcggacatccaggtcccatt
gggccgccaggacctcgaggcaacagaggtgaaagaggatctgagggctcaccaggccac
cctgggcagccagggccccctggacctcctggtgcacctggtccttgctgtggtggagga
ggtgttgcctcccttggaggcggtgaaaagtctgctggatttgcaccctactatggtgat
gaaccaatggatttcaagatcaacaccgaggagattatgtcttccctcaagtctgttaat
ggacaaatagaaagtcttattagtcccgatggttctcgtaaaaacccagcgcggaactgc
agagacctgaaattttgccatcctgaactcacgagcggcgaatattgggtcgatcctaac
cagggttgcaagatggatgctatcaaagtgttctgtaacatggaaaccggggagacgtgc
ataaacgccaacccaatgactgttccacggaagaactggtggacagattctgctgctgag
aagaaacatgtttggtttggagaatctatggatggtggctttcagttcagctatggcaat
cctgaccttcctgaagatgtccttgatgtacaactggcatacctcaggctcctctctagc
agggcctcccagaacattacataccactgcaagaacagtattgcctacatggaccaggcc
actggcaatgtcaagaagtctctaaagctcatgggatcgaatgaaggggaattcaaggcg
gaaggaaacagcaaattcacctacacagtcctggaggatggctgtgcaaaacacaccggg
gaatggagcaaaaccgtctttgaatatcgaacacgcaaggctctgagattacccatcata
gatattgcaccctatgacatcggtggtcctgatcaagaatttggtgtggacgttggccct
gtttgctttttgtaa
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integrated database retrieval system