Microtus oregoni (creeping vole): 121460337
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Entry
121460337 CDS
T08307
Symbol
Pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg03015
mRNA surveillance pathway
morg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121460337 (Pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
121460337 (Pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
morg03019
]
121460337 (Pabpc1l)
03041 Spliceosome [BR:
morg03041
]
121460337 (Pabpc1l)
Messenger RNA biogenesis [BR:
morg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121460337 (Pabpc1l)
mRNA cycle factors
Stress granule specific factors
121460337 (Pabpc1l)
Spliceosome [BR:
morg03041
]
Complex C
Other components
Complex C specific factors
121460337 (Pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RBD_DEAH11
RRM_Nup35
RRM_3
RRM_MARF1
RRM_occluded
RRM_fung
E2R135
Motif
Other DBs
NCBI-GeneID:
121460337
NCBI-ProteinID:
XP_041526619
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
MDPSGQGCALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFS
TFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE
AELGARALGFTNIYVKNLHVDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEK
HEEAQKAVDHMNGKDVKGQQLFVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKN
LDDSINDERLKEVFSAYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYRRQLSRPVLSSFQQTTNYLVPAVSQSTAQAMYYASGSM
APIQPDPRWTAQSHRPSVFLCAACPPAASVVQSLSTMPHSYLHLDSACQASSHMPHLQSV
VNIGTQTTGPGGEGCSIPGQSLLTHRGPSSAHSAHGVQESAVYVPGHQPLTVSMLAAAPL
HEQKQMIGERLYSLIHDTCAPLTGKITGMLLEMDNLELLFLLESPESLHAKIEEALAVLW
AHQELESAESNRN
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggaccccagtggccagggctgcgcactctcctcactctatgtgggcgatctgcacccc
gatgtgactgaagctatgctctatgagatgttctcccccatcggcactattctgtccatc
cgtgtgtgccgggacgtggctacccgacgctccttgggctatgcctacatcaacttccag
cagcctgctgacgcggaacgggcactggacacaatgaactttgagatgatcaaaggccaa
cccatccgtatcatgtggtcccaccgagacccagggcttcgaaagtctgggatgggcaac
atctttatcaaaaacttggagaattccattgataacaaggctctctatgacaccttctcc
accttcgggagcatcctctcttctaaggtagtatataacgaacatggatcacggggcttt
ggcttcgtacattttgagactcatgaggctgcccagaaggccatcaacaccatgaatggg
atgttgctgaatgaccgaaaagtcttcgtaggccacttcaagtctcgacagaagcgggag
gcagagctgggggctcgggccctggggttcaccaacatctacgtgaagaacctgcatgtg
gacatggatgaacagggcctccaggatctcttctcccaatttggaaagatgcagagtgtc
aaggtgatgagagacagcaatggccaatcccggggcttcggctttgtcaactttgagaag
catgaggaagctcagaaggccgtggaccacatgaacgggaaggatgtgaaagggcagcaa
ctgtttgtgggtcgggcccagaagcgggcagagcggcagagcgagctgaagcgcaggttt
gagcagatgaagcaggagaggcagaatcgttatcagggtgtgaacctctacgtgaagaac
ctggacgactccatcaatgacgagaggttgaaggaagtgttctctgcctatggagtgatc
accagtgctaaggtgatgacagaaagtagccacagcaaggggtttggctttgtctgcttt
tcctctccagaagaggcaacaaaggctgtgaccgagatgaatgggcgcatcgtgggcact
aagcctctgtatgtggccctggcacagcgcaaggaagagcggaaggccatcttgaccaac
cagtataggcggcagctgtcgcgccctgtcttgagctccttccagcaaactaccaactac
ttagtgcctgctgtgtcccagtctacagcacaggccatgtactatgcttctggctccatg
gctcccatacaacctgaccccaggtggacagcccagtcacacagaccctctgtttttctc
tgtgctgcctgccctccagctgcctcagtggtccagtctctaagcaccatgccacactcc
tatcttcacctggacagtgcctgccaggcctccagccatatgcctcacttgcagagtgta
gtcaacattggtactcagactacaggcccaggtggggagggatgctctattccaggccag
tctctcctgacacatagaggaccttcatctgcacacagtgcccatggggtccaggagtcg
gctgtatatgtccctggccatcagcctctgactgtgtccatgctggctgccgcacccctg
catgaacagaaacagatgattggggagcgtctctactccctcatccacgatacctgcgcc
ccactgactggcaagatcacaggcatgctgctggagatggacaacctggagcttctgttt
ttgctggagtccccagagtccctccatgccaagatagaagaggcgctggcagtgctgtgg
gctcatcaggaactggagtcagcagaaagcaacaggaactga
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integrated database retrieval system
