Microtus oregoni (creeping vole): 121462865
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Entry
121462865 CDS
T08307
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg03013
Nucleocytoplasmic transport
morg03015
mRNA surveillance pathway
morg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121462865
09122 Translation
03013 Nucleocytoplasmic transport
121462865
03015 mRNA surveillance pathway
121462865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
morg03019
]
121462865
03041 Spliceosome [BR:
morg03041
]
121462865
Enzymes [BR:
morg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121462865
Messenger RNA biogenesis [BR:
morg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121462865
Spliceosome [BR:
morg03041
]
Complex C
Other components
EJC/TREX
121462865
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121462865
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121462865
NCBI-ProteinID:
XP_041530765
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETVAGGDGTEAPAKKDVKDSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPNAKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFNATLSKEIRPVCH
KFMEDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKFFDLLDVLEFNQVVIFEKSVQCC
IALAQLLVEQNFPAIAIHRGMPQEERPSRYQQFEDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHQVARAGRFGTKGLAITFVSDENDAKILNDVQDHFEVNISELPDEIDI
SSYIEQTQ
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgacgttgacaacgagctcttagactacgaagatgatgaagtggagaca
gtggctgggggagatggcaccgaagcacctgccaagaaagacgtcaaggactcctacgtc
tccatccacagctccggcttccgagacttcctgctcaagccagagctgctccgggccatt
gtagactgtggctttgagcatccatcagaagttcagcacgaatgcatccctcaggccatt
ctggggatggatgtcctgtgccaggccaagtcgggcatggggaagacagcagtgtttgtc
ctggccacactgcagcagctggagccaatcactgggcaggtgtctgtgctggtgatgtgt
cacactagggagttggcctttcagatcagcaaggagtacgagcgcttctcaaagtacatg
ccgaacgccaaggtggcagtgttttttggcggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccacacatcgtcgtggggactcccggccgaattctagccctggct
cgaaataagagcctgaacctcaagcacattaaacactttatcttggacgagtgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatctttcgcatgaccccccat
gagaagcaggtcatgatgttcaatgccaccttgagcaaagagatccggccagtctgccac
aagttcatggaagatcctatggagatcttcgtggatgacgagaccaagttgacgctgcac
gggttgcagcaatactacgtgaaattgaaggacaatgagaagaaccggaagttttttgat
cttctcgatgtcctcgagttcaaccaggtggtgatctttgagaagtccgtgcagtgctgc
attgccctggcccagcttctagtggagcagaacttcccagccattgcgatccaccgtggg
atgccccaggaggagaggccctctcggtatcagcagttcgaggatttccagcggcggatt
cttgtggctaccaacctgtttggccgaggcatggacattgaacgtgtgaacatcgccttc
aactatgacatgccagaggactcggacacctacctgcaccaggtggccagggcaggccgg
tttggcaccaagggcttggctatcacatttgtgtcagatgagaatgatgctaagatcctc
aatgacgtgcaggaccactttgaggtgaacatcagtgaactacctgatgagattgacatc
tcctcctatattgagcagacgcagtag
DBGET
integrated database retrieval system
