Microtus oregoni (creeping vole): 121464218
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Entry
121464218 CDS
T08307
Symbol
Scn11a
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
morg
Microtus oregoni (creeping vole)
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
morg04040
]
121464218 (Scn11a)
Ion channels [BR:
morg04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121464218 (Scn11a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
121464218
NCBI-ProteinID:
XP_041532881
LinkDB
All DBs
Position
Unknown
AA seq
1765 aa
AA seq
DB search
MEDRYYPVIFPDERNFRPFTSDSLAAIEKRIAIKREKKKSKDTTGAEPQPRPQLDLKASR
KLPKLYGDIPRDLIAKPLEDLDPFYRDHKTFMVLNKKRTIYRFSAKRALFILGPFNPVRS
LVIRISVHSLFSVFIICTVVVNCMFMANFGDRISDMGISEYIFTGIYILEAVIKILARGF
ILDEFSFLRDPWNWLDFIVIGTAIATCFPGTKVNLSALRTFRVFRALKAISVISGLKVIV
GALLRSVKKLVDVMILTLFCLSIFALVGQQLFMGILNQKCVKTNCGPNPTSNKDCFVKEN
NSDDFVMCGTWFGSSSCPNGSTCNKTSFNPDYNYTNFDNFGWSFLAMFRVMTQDSWEKLY
RQILRTSGIYFVFFFVVVIFLGSFYLLNLTLAVVTMAYEEQNRNVAAETAAKEKMFQEAQ
QLLREEKEALVAMGIDRSSLNSLQASSFSPKKKKFFSSKTRKSFFMRGSKRDRALASESV
DDSAKNPQLLEQTKRLSQNLPVDLFDEHMDPFHRQRALSAVSILTITMQEQEKSQEPCLP
CGKNLASKYLVWDCSPQWLCVKKVLRSVMTDPFTELAITICIIVNTVFLAMEHHDMDDTF
INLLKIGNWVFTGIFVAEMCLKIIALDPYHYFRHGWNVFDSIVALLSLADVLYTNLSDKS
SRSNRSFLASFRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTMVLTIVVFIFSVVGMQ
LFGTKFNKTVSTGQEQRTRRWHMGDFYHSFLVVFRILCGEWIENMWECMQGMDGSPLCVI
VFVLIMVVGKLVVLNLFIALLLNSFSNEERDGHPEGETRKTKVQLALERFHRAFSFVGHA
LQNFCCKRCRRQTSPKPKEIPASFDSESKDSIPLDTKPWKEFDAQMTLDSGHGRPRLAPL
AEEEDDFECFDEFRASRISQAGAEVQTCDVRLETKQPTSPDDQGVDTEVFSEEDPHLAIQ
SARKKSDAASVLSECSTIDLNSFINFRNTDPPKKQPDRCLPKSLGCHFLCHKRNKRKPCW
FVWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIFEDINISTRPHIERLLRCTDNIFTF
IFILEMILKWVAFGFRRYFTSAWCWLDFLIVIVSVVSLTNSPSLKSFRTLRALRPLRALS
QFEGMKVVVNALISAIPAILNVLLVCLIFWLIFCILGVNFFSGRFGRCINGTDINKYFNH
TEIQNRSQCRESNFSWEVPKVNFDNVGNAYLALLQVATYKGWLDIMNAAVDSRGKDEQPG
FEENSFAYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISGQDIFMTEEQKKYYNAMK
KLGTKKPQKPIPRPLNKCQAFVFDLVTSQVFDIIILGLIVLNMIIMMAESEGQDQQVKKI
FDILNIAFVAIFTVECLIKIFALRQYYFTNGWNLFDCVVVVLSIISTLVSGLENSDIPFP
PTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMNC
FSKVERGSGIDDIFNFETFSGSMLCLFQVTTSAGWDALLGPMLVSKGSNSSQDCQQPRIA
IIYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLGEDDFDIFYEIWEKFDPEATQF
IQYSALSDFADALPEPLRVAKPNKFQFLVMDLPMVMGDRLHCMDVLFAFTTRVLGDSSGL
DTMKAMMEEKFMEANPFRKLYEPIVTTTKRKEEEVCAAVIQRAYRKHMQKVVRLKLQDRS
SPSDQKLCNGDLSSLDMAKVKVHCD
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaggtactacccagtgatcttcccagatgagaggaatttccgccccttcacc
tctgactccctggctgccatagagaagcgcattgctatcaagagggagaagaagaagagc
aaagacacgacaggggctgagccccagcctcggcctcagcttgacctcaaggcctccaga
aagctacctaagctttacggtgacattcctcgtgatctgattgcaaagcccctggaagac
ctcgacccgttctacagagaccataagacatttatggtgttgaacaagaagaggacgata
tatcgcttcagtgccaagcgggcgttgttcattttggggcctttcaaccctgtcagaagt
ttagtgattcggatttctgtccattcactcttcagcgtgtttattatctgcacggtggtc
gtcaactgtatgttcatggccaattttggggacagaatttcagacatgggaatttctgaa
tacatcttcactgggatttacattttagaggctgtgattaaaatattggcaagaggcttc
atcctggatgagttttccttcctccgagacccgtggaactggctggatttcattgtcatt
ggaacagcgatcgcaacttgttttccaggtaccaaagtcaatctatcggctctccgtacc
ttccgagtgttcagagctctgaaagcaatttctgtcatctcaggtctgaaggttatcgtc
ggggccctgctgcgctctgtgaagaagctggtggatgtcatgatcctcacgctcttctgc
ctcagcatctttgcactggttgggcagcagctcttcatggggattctgaaccagaaatgt
gtcaagaccaactgtggccctaaccctacgtccaacaaggactgctttgtaaaggaaaac
aatagtgacgacttcgtcatgtgtggcacctggttcggcagcagctcctgtcccaatggt
tctacatgcaacaaaacctcatttaacccagactataactacacgaactttgacaacttc
ggctggtcttttctcgccatgttccgggtcatgactcaggactcctgggagaagctgtac
cgacagatccttcggacctctggcatctacttcgtcttcttctttgtggtggtcatcttc
ctgggttctttctacctgctcaacttaaccctggctgttgtcaccatggcatatgaggag
cagaacaggaacgtggctgctgagacagcggccaaggaaaagatgtttcaagaagcccag
cagctgttaagggaggagaaagaggctctggttgccatggggattgacagaagttcgctt
aattccctccaagcatcgtccttttccccaaagaagaaaaagttttttagtagtaagaca
agaaagtccttctttatgagagggtctaagagggacagggccttggcgtcggagtcggtg
gatgattccgctaaaaacccacaactccttgagcaaaccaaacgactgtcccagaacttg
cccgtggacctctttgatgagcacatggaccccttccaccggcagagggcactgagtgcc
gtcagcatcttgaccatcaccatgcaggaacaagaaaaatcccaagagccttgtctccca
tgtgggaaaaacttagcatccaagtacctggtgtgggactgtagccctcagtggctgtgc
gtcaagaaggtcctgcggtccgtgatgaccgaccccttcactgagctcgctatcaccatc
tgcatcatcgtcaataccgtcttcctggccatggagcatcatgacatggacgacacgttt
ataaatctactaaaaataggaaactgggttttcactggaattttcgtagcggaaatgtgt
ctaaagatcatcgcgctggacccgtaccactacttccgccacggctggaacgtcttcgac
agcatcgtcgcccttctgagtcttgccgacgtcctttacaccaacctgtccgataagagc
agccgctcgaatcgctccttcttggcttccttcagggtgctgagggtcttcaagttggcc
aaatcctggcccactttaaacactctcattaagatcatcggccactccgtgggtgcgctc
ggaaacctgaccatggtcctgaccattgtggtcttcattttctccgtggttggcatgcag
ctttttggcaccaagttcaacaagaccgtctctaccggccaggagcagcgcacgcggcgc
tggcacatgggcgatttctatcactccttcctggtggtgttccgcattctctgcggggag
tggatcgagaacatgtgggaatgcatgcagggcatggacggctctccgctgtgcgtcatt
gtctttgtgctgatcatggtggtgggaaagctcgtggtgcttaacctcttcattgccttg
ctgctcaattccttcagcaatgaggagagggacgggcaccccgaaggagagaccaggaaa
acgaaagtgcagctggctctggagaggttccaccgggccttttcctttgtggggcacgct
cttcagaatttctgttgtaagagatgtcggaggcaaacctcaccgaagccaaaagagatc
ccagcgagttttgatagtgagagtaaagacagtattcctctggatacaaagccctggaag
gaatttgatgcacaaatgactttggactctggtcacggcaggcctcgcttggccccactt
gcagaggaagaggatgactttgaatgctttgatgaattcagagcctcacgcatctcccaa
gctggtgctgaagttcagacctgtgatgtccgtctggagaccaagcagcctaccagccca
gatgaccaaggtgtggacactgaagtgttctctgaagaagatccgcatctagccatacag
agtgctcggaagaagtctgatgcggcaagcgtgctctcagaatgcagcaccattgatctg
aatagcttcataaatttccgaaacacggatccccccaaaaagcaaccggatagatgctta
cccaaaagcctcggttgccattttctgtgccataagagaaacaagagaaagccctgctgg
tttgtgtggtggaatcttcggaaaacatgctaccagatcgtgaagcacagctggtttgag
agctttattatcttcgtcatcctgctgagcagcggcgctctgatatttgaagacatcaac
atctccacacggccccatatcgagcgactgctaaggtgtaccgataatattttcacattt
atttttatcctggagatgattctaaagtgggtggccttcggattccggaggtatttcacc
agcgcctggtgctggctcgatttcctcattgtaattgtgtctgtggtcagtctcacgaac
tcaccaagcctgaagtccttccggaccctgcgggccctgaggcccctgcgggcgctgtct
cagtttgaaggaatgaaggttgtggtcaacgccctcatcagcgccatacccgccattctc
aacgtcctgctggtctgcctcattttctggctcatattttgcatcctgggagtaaatttt
ttttcggggaggttcggaaggtgtattaacgggacagacataaataaatacttcaatcat
actgaaattcaaaaccgaagccagtgtagagagagcaatttctcgtgggaggtcccgaaa
gtcaattttgacaacgtggggaatgcctacctcgctctgctgcaggtggcaacgtataag
ggctggctggacattatgaacgctgctgtggactccagagggaaagatgagcagccgggc
tttgaggagaacagctttgcatatctttacttcgtggtctttatcatctttggctcattc
ttcaccctgaacctctttatcggcgttattatcgacaacttcaatcagcagcagaaaaag
ataagtggccaagacatttttatgacagaagaacagaagaaatactataacgcaatgaaa
aagttaggaaccaaaaaacctcaaaaacccatcccaagaccactgaacaaatgtcaagcc
tttgtgttcgacctggtcacaagccaggtctttgacatcatcattctgggtcttattgtc
ctaaatatgattatcatgatggctgaatctgaaggccaggaccagcaagtgaagaaaatc
tttgatattctcaacatagcctttgtggccatctttaccgtagagtgtctcatcaaaatc
tttgctttgaggcaatactacttcaccaatggctggaatttatttgattgtgtggtcgtg
gttctttctatcattagtaccctggtttctggcttggagaacagcgacattcctttccca
cccacgctcttcagaatcgtccgcttggcgcggattggccgaatcctccgactggttagg
gcggcgcgcggcatcaggacgctcctctttgctctgatgatgtctctcccctctctcttc
aacatcggtctgctgctctttctggtcatgttcatttacgccatcttcgggatgaactgt
ttctccaaagtggagaggggctccgggatcgacgacatcttcaactttgaaacgttttcg
ggcagcatgctctgtctcttccaggtgaccacttccgctggctgggatgctctccttggc
cccatgctggtttcaaaaggctccaactcctctcaagactgccagcagccacggatagcc
ataatctatttcgtcagttacatcatcatctccttcctcatcgtggtcaacatgtacatc
gccgtgatcctggagaacttcaatacggccacggaggaaagcgaggaccctctgggtgaa
gatgacttcgatatcttctatgagatctgggagaagtttgacccagaagcaacccagttc
atccagtactcggccctctctgactttgcggacgccctgccggagccgttaagggtggcc
aagcctaacaagtttcagtttctagtcatggacttgcccatggtgatgggcgatcggctc
cactgcatggacgttctctttgccttcaccacccgggtcctcggggactccagtggctta
gataccatgaaagcgatgatggaggagaagtttatggaggccaatcctttcagaaagttg
tatgagcccatcgtcaccaccaccaagaggaaggaggaggaggtgtgtgctgctgtcatc
caaagggcttaccgaaaacacatgcagaaggtggtcaggttgaagctgcaagacaggtca
agcccatccgaccaaaaattgtgcaatggagacttgtctagcttggatatggccaaggtc
aaggttcactgtgactga
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integrated database retrieval system
