Microtus oregoni (creeping vole): 121464936
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Entry
121464936 CDS
T08307
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121464936 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
morg03019
]
121464936 (Xab2)
03041 Spliceosome [BR:
morg03041
]
121464936 (Xab2)
Messenger RNA biogenesis [BR:
morg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121464936 (Xab2)
Spliceosome [BR:
morg03041
]
Complex B
Other components
Prp19-related factors
121464936 (Xab2)
Complex C
121464936 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_2
TPR_12
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_21
TPR_16
Motif
Other DBs
NCBI-GeneID:
121464936
NCBI-ProteinID:
XP_041533985
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAVRTVMTVRDFSQVFDSYA
QFEESMIAAKMETSSELGREEQDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGHPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKIFFVRSDASRDELAELAQQANPEEIQLGEEEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgggttccgcgtcccgagcggccggatcttgtttttgaggaggag
gaccttccctatgaggaagaaatcatgaggaatcagttctccgtcaaatgctggctccgc
tacatcgagttcaaacagggggcccccaagccccggctcaatcagttgtacgagcgggca
ctcaaactgcttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggca
caggtgaagcatcgctgcgtgactgatcctgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccacgtctgtggctagactactgccagttcctc
atggaccagggacgagtaacacacacccgccgcacctttgatcgtgccctccgggcctta
cccatcacacagcactctcgcatctggcccctgtacctccgcttcctacgctcccaccca
ctgcctgagactgctgtgagaggctaccgtcgcttcctcaagctcagtcctgagagtgct
gaggaatacatcgagtacctgaaatccagtgaccggctggatgaggctgcacaacgcctg
gccaccgtggtgaacgacgagcgctttgtgtccaaggcgggcaagtccaactaccagctg
tggcatgagctctgcgaccttatctcccagaacccggacaaggtacagtccctcaatgta
gatgccataatccgtggtggactcacccgcttcaccgaccagctgggcaagctatggtgc
tcgctggctgactactacatccgcagtggccacttcgagaaggctcgggacgtgtacgag
gaggctgtgcgcactgtgatgactgtgcgggacttcagccaggtgttcgacagctacgcc
cagttcgaggagagcatgattgcagcaaagatggagacttcctctgaactggggcgtgag
gagcaggatgacgtggacctggagttgcgcctggcccgcttcgagcagctcattagccgg
cggcccctactcctcaacagtgtcctgctgcgccagaacccacaccatgtccatgagtgg
cacaagcgtgtggccctgcatcagggccacccccgtgagattatcaacacatacacagag
gctgtgcagacagtggaccctttcaaggccacaggcaagccccacacgctgtgggttgca
tttgccaagttttatgaagataatggacagctggatgatgcccgtgtcatcctagagaag
gccaccaaggtaaacttcaagcaagtggatgacttggcaagcgtgtggtgccagtgtggg
gagctggagctccggcatgagaattatgatgaggccttgaagctgctgcggaaagctaca
gcattgcctgcccgcagggctgagtactttgatggttcagagccagtgcagaaccgtgta
tacaagtcgctgaaggtgtggtccatgcttgccgacttggaggaaagtctgggcaccttc
cagtcaaccaaagccgtgtatgaccgaatcctggacctgcgcatagccacaccgcagatc
gtcatcaactatgccatgttcctagaggagcacaagtactttgaggagagctttaaggca
tacgagcgtggcatatcactgttcaaatggcccaacgtgtcagacatctggagcacctac
ctgaccaaattcattgcccgctacgggggccgcaagctggaacgtgcacgggacctcttc
gagcaggcactagatggctgcccgcccaaatatgccaagacactatacctgctgtatgca
cagctggaggaggagtggggccttgcccgtcatgccatggccgtgtatgatcgcgctacc
agggcagtggagccagcccagcagtatgatatgttcaatatctacatcaagcgggctgct
gagatctatggtgtcacccacactcgtggcatctaccagaaggccattgaggtgctgtct
gatgagcatgcccgggagatgtgcctgcggtttgcagacatggagtgcaagcttggtgaa
attgaccgcgcccgggccatctacagtttctgctcccagatctgtgaccccaggacaact
ggggcattctggcaaacatggaaggactttgaggttcggcatggcaatgaggacaccatc
agggagatgctgaggatacgtcggagtgtgcaggccacatataatactcaagtcaacttc
atggcctcacagatgctcaaggtgtccggcagtgccacaggcacagtgtctgacctggct
cctgggcagagcggcatggatgacatgaagttgctagaacagcgggcagagcagctagca
gctgaggcagagcgggaccagccccctagggcccagagcaagatcttctttgtaaggagt
gatgcatccagggacgagctggcagagctggctcagcaggccaatcccgaggagatccag
ctgggcgaggaagaggacgaggatgagatggacctggagcccaatgaagtccgactggaa
cagcagagcgtgccagctgctgtatttgggagcctgaaggaagactga
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