Microtus oregoni (creeping vole): 121465748
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Entry
121465748 CDS
T08307
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg04140
Autophagy - animal
morg04148
Efferocytosis
morg05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121465748 (Vps39)
04148 Efferocytosis
121465748 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121465748 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
morg04131
]
121465748 (Vps39)
Membrane trafficking [BR:
morg04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
121465748 (Vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Lgl_C
KCTD11_21_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
121465748
NCBI-ProteinID:
XP_041535064
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDAGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHAETGE
EVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIVAVLPRYVEIRTLEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRERVLNFLTENFKGLAIPYLEHIIHVW
EETGSRFHNCLIQLYCEKVQSLMKDYLLSLPTGKNPVPAGEEMGELGEYRQKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDMKMAKEYCHKHYDQNK
EGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHYSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNAADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccggtgccaatcctggaaaagcttcccctgcagatcgactgc
ctggctgcctgggaggaatggcttcttgttggaaccaaacaaggacatcttcttctctac
aggattcggaaggatgccggttgtaacaggtttgaggtaacactagagaagtccaataag
aacttttccaaaaagatccagcagatccatgtggtttcccagtttaagattctagtcagc
ttgttagaaaacaacatttatgtccatgacttgctgacatttcaacaaatcactaccgtt
tcaaaggccaagggggcatcattgttcacctgtgacctccagcacgccgagaccggcgag
gaggtgctgcggatgtgtgtggcagtgaggaagaagctgcagctctacttctggaaggac
agggagttccatgaactgcagggggactttagtgttcctgatgtgcccaagtccatggca
tggtgtgaaaattctatctgcgttggcttcaagagagactactacctgatcagggtggat
ggaaaggggtccatcaaagagctcttcccaacaggaaagcagctggagcccttagttgcg
cctctggcagatggaaaagtagctgtgggtcaggatgatctcactgtggtgctcaacgag
gaaggcatctgtacacagaaatgcgcgctgaactggacagacatcccagtggccatggag
caccagcccccgtacattgtggcagtgttgccccggtacgtggaaatccgaacgctcgag
ccgaggctcctggttcagagcattgagttgcaaaggccccgcttcattacctcaggggga
tcaaacattatctatgtggccagcaatcattttgtttggagactcattcctgttcccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaactggctctacagctcgca
gaaatgaaagatgattcagatagtgaaaagcagcagcaaatccatcacattaagaacttg
tatgccttcaacctcttctgccagaagcgctttgatgagtccatgcaggtcttcgctaaa
cttggcacagatcccacccacgtgatgggtttgtaccctgacctgctgcccacagactac
aggaagcagctgcagtaccccaaccccctgcccacgctctctggtgccgaactggagaag
gctcatttagctctcattgactacctgacacagaaacgaagccagctggtaaagaagctg
aatgactcggatcaccagtccagcacttccccactcatggaaggcacccccaccatcaag
tccaagaagaaattactacagatcatcgacaccactctgctcaagtgctacctccataca
aacgtggccctggtggctcccttgctgcgcctggagaacaaccactgtcacattgaggag
agcgagcacgtgctgaagaaggctcacaagtacagtgagctgatcatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtgctggtggaccagtccaagaaagcaaactca
cctctgaaaggccatgagaggactgtgcagtatctgcagcacttgggcacagaaaaccta
catttgattttttcctactcggtctgggtgctgagagacttcccagaagatggcctgaag
atattcactgaagacctcccagaggtggagtctctgccacgagagcgagtgctcaacttc
ttaacagagaatttcaagggtctggctattccttatctggagcacatcatccacgtgtgg
gaagaaacaggctcacggttccacaactgccttatccagctgtactgtgagaaagtccag
agtctgatgaaagactaccttctgtccctgcccacaggcaaaaatcccgtccccgctgga
gaggaaatgggcgagctgggagaataccgacagaagctgctcatgttcctggagatttcc
agctactatgacccaggccggctcatctgtgattttcccttcgatggtctcttagaagaa
agagctctcctgttggggcgcatggggaagcacgagcaagctctcttcatctatgtccac
gtcttgaaggacatgaagatggctaaggagtactgccacaaacactatgaccaaaacaaa
gaaggcaacaaagacgtgtatctgtctctgcttcggatgtacctgtcaccccccagcatt
cactgcctggggccaatcaaactggagctactggagccacaggcaaacctccaagccgcc
ctgcaggtcctagagctgcactacagcaagctagataccaccaaggccatcaaccttcta
ccagcaaacactcaaatcaatgacatacgcatctttctagaaaaggtcttggaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgccgagttcctgagg
gttcaggaagagcggattttgcaccagcaggtgaagtgcatcatcaccgaggaaaaggtg
tgcatggtgtgcaagaagaagattgggaacagtgcgtttgcgaggtacccaaatggagtg
gttgtgcactacttctgttccaaagaagtcaacgcagccgacacctga
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