Microtus oregoni (creeping vole): 121466547
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Entry
121466547 CDS
T08307
Symbol
Prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
morg
Microtus oregoni (creeping vole)
Pathway
morg04120
Ubiquitin mediated proteolysis
morg04137
Mitophagy - animal
morg04141
Protein processing in endoplasmic reticulum
morg05012
Parkinson disease
morg05014
Amyotrophic lateral sclerosis
morg05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
morg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121466547 (Prkn)
04120 Ubiquitin mediated proteolysis
121466547 (Prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121466547 (Prkn)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
121466547 (Prkn)
05014 Amyotrophic lateral sclerosis
121466547 (Prkn)
05022 Pathways of neurodegeneration - multiple diseases
121466547 (Prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
morg04131
]
121466547 (Prkn)
04121 Ubiquitin system [BR:
morg04121
]
121466547 (Prkn)
03029 Mitochondrial biogenesis [BR:
morg03029
]
121466547 (Prkn)
Enzymes [BR:
morg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
121466547 (Prkn)
Membrane trafficking [BR:
morg04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
121466547 (Prkn)
Aggrephagy
Other aggrephagy associated proteins
121466547 (Prkn)
Xenophagy
Other xenophagy associated proteins
121466547 (Prkn)
Ubiquitin system [BR:
morg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
121466547 (Prkn)
Mitochondrial biogenesis [BR:
morg03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
121466547 (Prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Crinkler
Motif
Other DBs
NCBI-GeneID:
121466547
NCBI-ProteinID:
XP_041536233
LinkDB
All DBs
Position
Unknown
AA seq
465 aa
AA seq
DB search
MIVYVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDLTVQSCD
LEQQSIVHIVQRPWRKSLQTNASGEDKPHIISGGPAWEPRSLTRVDLSSHILPANSVGLA
VILDTSSSSDSEAARGPAGKPTYNSFYVYCKGPCHRVQPGKLRVQCGTCRQATLTLAQGP
SCWEDVLIPNRMSGECQSPDCPGTRAEFFFKCGAHPTSDKDTSVALNLITTNSRNITCIA
CTDVRSPVLVFQCNHRHVICLDCFHLYCVTRLNDRQFVHDAQFGYSLPCVAGCPNSLIKE
LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEQGQRKVTCEGGNGLGC
GFIFCRDCKEAYHEGECDSLFEASGATSQAYRVDKRAAEQARWEEASKETIKKTTKPCPR
CNVPVEKNGGCMHMKCPQPQCRLEWCWNCSCEWNRACMGDHWFDV
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtacgtcaggttcaactccagccatggcttcccagtggaggtggattctgac
accagcatcttccagctcaaggaagtggttgctaagcgacagggggttcctgctgaccag
ctgcgtgtgatttttgctgggaaggagcttcggaatgacctgacagtgcagagctgtgac
ctggaacagcagagcatagttcacatagtgcagagaccatggagaaaaagtcttcagaca
aacgcttctggagaggacaagccccacatcatctcagggggccctgcctgggagcccagg
agcttgacaagggtggacctcagcagccacatcctgccggcgaactccgtggggctggcg
gtcattctggacacaagcagcagcagcgattccgaagcggccagaggtccagcaggtaaa
cccacctacaacagcttctatgtctactgcaaaggtccctgccacagagtccagcctgga
aagctccgagttcagtgcggcacctgcagacaagccaccctgaccttggcccagggtccg
tcctgctgggaagatgtcttaattccaaaccggatgagtggcgagtgccagtctccagat
tgtcctggaaccagagcagagtttttctttaaatgcggagcacacccaacctctgacaag
gatacatctgtagccttgaacctgatcaccactaacagccggaacatcacctgcatagca
tgcacagatgtcaggagccctgtcctggtcttccagtgtaaccaccgccacgtgatctgc
ttggactgcttccacttgtactgtgtcaccagactcaacgaccggcagtttgtccatgat
gctcagtttggctactccctgccgtgtgtggctggctgtcccaactccctgattaaagag
ctccatcacttcaggattcttggagaagagcagtacaacaggtaccagcagtatggcgcg
gaggagtgtgtactgcagatggggggcgtgctgtgcccccgtcctggctgcggagctggg
ctgctgcctgaacagggccagaggaaagtcacctgtgaagggggcaacggcctgggctgc
gggttcatcttctgccgggactgtaaggaagcataccacgaaggtgaatgtgactcgctg
tttgaagcctcgggggccacctctcaggcctaccgagtggacaaaagggctgctgagcaa
gctcgctgggaggaggcctccaaagaaaccatcaagaaaaccactaagccttgtcctcgc
tgcaatgtgccagtggaaaaaaatggaggctgcatgcacatgaagtgtccgcagccgcag
tgcaggctggagtggtgctggaactgcagctgtgagtggaaccgagcctgcatgggtgat
cactggttcgacgtgtag
DBGET
integrated database retrieval system
