Faucicola osloensis: AXE82_00260
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Entry
AXE82_00260 CDS
T04294
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mos
Faucicola osloensis
Pathway
mos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXE82_00260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mos03019
]
AXE82_00260
Enzymes [BR:
mos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXE82_00260
Messenger RNA biogenesis [BR:
mos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXE82_00260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Helicase_C_2
Cas3-like_C_2
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AME00390
LinkDB
All DBs
Position
59176..60357
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AA seq
393 aa
AA seq
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MSVFQTFSQLPLHPALKQAIDQLGYQTLTPIQAQILPNTLAGQDAIGQAQTGTGKTATFL
LTIINELLNNPINPEVDGDRFLGETRALVLAPTRELAQQIYQDCLELTKFTELHTVCLLG
GTDYETQLKQLHQKFVDIIIATPGRLIDFCFQHHVYLDRLEILVLDEADRMLDMGFIPDI
KRLIRMMPANTHRQTLLFSATFNQDVMNLAYRWLYQPIFVEIAPEQKTSQTIEQLFFTLM
ESDKLAALQQIIEKISPKKMIVFANRKDQVKRLYDKLNRQYKVVILSGDVIQAKREKYLA
QFRQGDANILVATDVAGRGIHVDDVACVVNYTLPDSPDDYVHRIGRTGRAGNKGMSISFI
SENDGFNLPAIEQYLDESIKMQQWSNDTRFLED
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atctctgtgtttcaaactttctcacaattaccccttcatccagcgctcaaacaagcgatt
gaccaactaggctatcaaacgctgacccctatccaagcgcagatattgcccaatacactc
gctgggcaagacgccattgggcaggcacaaacaggtacaggtaagacagcaacgttttta
ctgaccatcatcaatgaattgctgaataatcctataaaccctgaggttgatggcgatcgt
tttttgggtgaaacccgtgcgctggtgctcgcgccgactcgagaattggctcaacaaatt
tatcaagattgccttgaactcaccaagtttaccgaactgcataccgtttgtttgctcggt
ggcacagactatgagacgcagttaaagcagctgcatcaaaagtttgtcgatatcatcatc
gccaccccaggtcgtttgattgatttttgctttcagcaccatgtgtatctcgatcgtctt
gaaattttggtattagatgaagcagatagaatgctggatatggggtttatacctgatatc
aaacgcttgattcgtatgatgcccgccaatacgcatcggcaaaccctgcttttttccgct
acctttaaccaagatgtgatgaatttagcttatcgctggttatatcagccgatttttgta
gaaattgcgcccgaacaaaaaaccagtcaaaccatcgagcaactgttttttaccctgatg
gaatcggataaactggcggcgttacagcaaattattgaaaaaatttcccccaagaaaatg
attgtctttgccaatcgtaaagaccaagtcaagcgcctgtatgacaaacttaatcgtcaa
tataaagtagtgatattgtcaggggatgttatccaagccaaacgcgagaagtatttggca
caatttcgtcaaggcgatgccaatattttagtggcgactgatgttgcagggcgaggtatt
catgtggatgatgtggcttgtgtggtcaattacaccttgccagacagtcctgatgattac
gttcatcgtatcggtcgcaccggtagggcaggcaataaaggcatgagtataagctttatc
agtgaaaacgacggatttaacttaccggctatcgagcaatatttggatgaaagtatcaaa
atgcagcaatggtcgaatgatacccgttttttagaggattaa
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