Faucicola osloensis: AXE82_09580
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Entry
AXE82_09580 CDS
T04294
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mos
Faucicola osloensis
Pathway
mos03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXE82_09580 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mos03021
]
AXE82_09580 (rpoB)
03400 DNA repair and recombination proteins [BR:
mos03400
]
AXE82_09580 (rpoB)
Enzymes [BR:
mos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXE82_09580 (rpoB)
Transcription machinery [BR:
mos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXE82_09580 (rpoB)
DNA repair and recombination proteins [BR:
mos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXE82_09580 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AME01975
UniProt:
A0A378QAP5
LinkDB
All DBs
Position
2163744..2167862
Genome browser
AA seq
1372 aa
AA seq
DB search
MAYSYTEKKRIRKSFAKLPTVMDVPYLLAIQVDSYEQFLQENKKPKGRENIGLQAAFNSI
FPIESHTGNAELQFVEYYLGTPEFDVRECILRGSTYAAPLRVKIRLVIKDKDVKDKDAKA
AIKDIREQSVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLY
NARIIPYRGSWLDFEFDAKDLVFARIDRRRKLLATVILHAIGMNTQQILDAFYEKTHVYK
GDEQFEIDLVTERLRGEMAQFEIVSPEGEVIVEQGKRINARAIRKIEQAGMTRLPVPDEY
LYERILAQDIVVDGEVIARANQLLDHETLVKISNNDIKEFDILFTNDIDHGSYIADTLRA
DTAMSREEALIEIYKVMRPGEPPTLDTAEKLFESMFFNPDRYDLSNVGRMKFNRRLGRVY
EPTNDPDVQRERSVLTNEDIIDVLKMLIEIRDGRGVVDDIDHLGNRRVRSVGEMTENQFR
VGLVRVERAVKERLSSAETDNLSPQDLINSKPVAAAIKEFFGSSQLSQFMDQNNPLSEIT
HKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLAVYAKTNEFG
FLETPYRKVVDGKVTDEIEYLSAIEEVGTVIAQADSPIDENGQLTEDYVSVRNYGEFVRM
APEKVTHMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTGME
RHVARDSGVCVTAKRGGVIMDVDASRVVVKVNEDEMQAGEAGIDIYNLIKYTRSNQNTCI
NQRIIVNQGDVIARGDILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILLSERVVKE
DRFTTIHIQELTCVARDTKLGTEEITADIPNVGEAALANLDEAGIVYIGAEVQGGDILVG
KVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPSSTKGTVIDVQVFTRDGVEKDSRA
QAIEKAQLDSYRKDLKEELRIFENAARGRIISLLDGQTVSGGAGLKSGTVLSEDSMQDMS
LETLLDIQPTQEDTAERLSQIGDFLTDKQKEIDEKFTEKKRKLTAGDDLTHGVQKIVKVY
LAVKRRIQPGDKMAGRHGNKGVVSRIMPIEDMPYDENGNPVDVVLNPLGVPSRMNVGQIL
ETHLGGAARGLGIKIDEMIKQQAAVAELRDFLDKIYNQIGGEQVDLGSLSDEEIITMSKN
LRAGVPMGTAVFDGAKEQQIKGLLELAGMPTSGQQVLFDGRTGQQFDRPVTVGYMYMLKL
NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS
DDVEGRTRMYKNIVDGEQSMSAGMPESFNVLTKEIKSLGINIELKDHSKSKN
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcgtatactgaaaaaaaacgcattcgtaaaagttttgcaaagttgcccacc
gtcatggacgtgccatacttattggccatccaagttgactcgtatgagcaatttttgcaa
gaaaataaaaagccaaaaggtcgggaaaacattggtttacaagccgcttttaattctatt
ttccctattgaaagccacactggcaatgccgagctacaatttgttgaatactatctaggt
acaccagagtttgatgtgcgcgaatgtattttacgtggttcaacctatgccgcgccatta
cgtgtcaaaatccgtttggtcatcaaagacaaagatgttaaagacaaagatgctaaagcg
gcaattaaagatatccgtgagcaaagcgtctatatgggtgaaattccattgatgactgaa
aacggtactttcgtgattaatggtactgagcgtgtcatcgtatcgcaactacaccgttca
ccaggggtattctttgaccatgacaaaggcaaatcacattcaagtggtaaagtgctgtat
aacgcccgtattattccttaccgtggttcatggttagactttgaatttgatgccaaagac
ttggtatttgctcgtattgaccgccgccgtaaattactggcaacggtgattttgcatgcc
attgggatgaatacgcaacagattttagatgcgttttatgaaaaaacccatgtgtataag
ggtgatgagcaatttgaaatcgatcttgtcactgagcgtttacgcggtgaaatggcgcag
tttgaaatcgtttcacctgagggtgaggtgattgtcgaacagggcaaacgtattaatgcg
cgcgcgattcgtaaaatcgaacaagccggtatgactagattacctgtgcctgatgaatac
ttgtatgaacgcattttggcacaagatatcgtggtggatggtgaagtcattgcacgcgct
aaccaattgctcgatcacgagactttggtcaaaatcagcaataacgacattaaagaattt
gatattttattcactaacgatatcgatcatggttcatacatcgccgatacactgcgcgcg
gatacggcgatgagccgtgaagaagcgttgattgaaatctacaaagtgatgcgcccaggt
gagccaccaacactcgatacggctgaaaaactgtttgaatcgatgttttttaacccggat
cgctatgatttatcaaacgtcggtcgcatgaagttcaaccgtcgtttgggccgggtctat
gagcccaccaatgaccctgatgtgcagcgtgaacgcagtgtattgaccaacgaagatatt
attgacgtattaaaaatgttgattgaaattcgtgatggtcgtggggtggtggacgatatt
gaccatttaggtaaccgccgtgtccgttcagttggcgagatgacagaaaatcaatttcgt
gtgggtttagtccgtgtcgagcgtgctgttaaagagcgtttaagctcagctgaaacagat
aacttgtcgccacaagatttaatcaactcaaaacctgtggcagccgctattaaagagttc
tttggttcatcacaattgtcacagttcatggatcaaaacaacccactgtcagaaattacc
cataagcgtcgtgtttctgcattaggtccaggtggtttaacacgtgaacgtgcaggcttt
gaagtgcgtgacgtacaccaaacccattatggtcgtgtgtgtccgattgaaacccctgag
ggtccaaacatcggtctgatcaactcactagccgtctatgctaaaaccaatgaatttggt
ttcttagaaaccccgtatcgtaaagtagtcgacggtaaagtgacggatgaaatcgagtac
ttatcagcgattgaagaagtgggcactgtaattgcacaagcggattcgccgattgatgaa
aacggtcagttgacagaagattatgtctctgtgcgtaactatggtgagtttgtgcgtatg
gcaccagagaaagtgacccatatggacgtatcaccgcgtcaggttgtatctgtggcagcc
agcttgattccattcttggaacatgatgatgccaaccgtgccttgatgggttcaaacatg
cagcgccaagcggtacccactttacggtcggataaaccactggttggtacaggtatggaa
cgtcacgttgcccgtgactcaggtgtgtgtgtgactgccaaacgtggcggcgtcattatg
gatgtggatgcgagccgtgtcgttgtaaaagtgaatgaagatgaaatgcaagcgggcgaa
gcgggtattgatatctacaacttaatcaaatacacccgttcaaaccaaaacacctgcatt
aaccaacgcattatcgtcaaccaaggtgatgtcattgcgcgcggggatatcttggctgat
ggtccatcaaccgatttgggtgagttggcattgggtcaaaacatgcgtgtggcgttcatg
ccttggaacggctacaacttcgaagactcgattttgttatctgagcgtgtggttaaagaa
gatcgttttaccaccattcatatccaagaattgacctgtgtggcgcgtgataccaaattg
ggtacggaagaaatcactgccgatattccaaacgtgggtgaggcagccctagctaatcta
gatgaagcaggtatcgtctatattggtgccgaagtacaaggtggcgatatcttggtgggt
aaagtgacaccaaaaggtgaaacgcagctcacccctgaagaaaaactacttcgtgcaatt
ttcggtgaaaaagccgcggacgtgaaagatacgtcgttacgcgtgccttcttctaccaaa
ggtacggtgattgacgtacaagtctttacccgcgatggtgtagaaaaagacagccgtgca
caagctatcgaaaaagcccagcttgatagctatcgtaaagacttaaaagaagaattgcgt
atctttgaaaacgccgcacgcggtcgcattatttcattgcttgacggtcaaactgtcagt
ggtggcgcgggcttaaaatcaggtacggtgttgagtgaagactcaatgcaagatatgtcg
cttgaaacattgcttgatattcagccaacccaagaagataccgcagagcgtttatcacaa
attggtgactttttaaccgataaacaaaaagaaatcgatgaaaaattcactgagaaaaaa
cgcaaattaacggcaggtgatgacttaacgcatggcgttcaaaaaatcgtcaaagtgtac
ttggcagtaaaacgtcgtattcaacccggtgacaaaatggcgggtcgtcatggtaacaaa
ggggtggtatcacgtatcatgccgattgaagacatgccatacgatgaaaacggtaatcca
gtggatgtggtactaaacccactaggcgtaccatcgcggatgaatgtcggtcagatttta
gaaacgcacttaggcggtgcagcacgtggtttgggtatcaaaattgacgagatgatcaaa
caacaagcggcagttgctgagttgcgtgatttcttagacaaaatttataaccaaattggc
ggcgagcaagtggacttaggcagcctcagtgatgaggaaatcattactatgtcaaaaaat
ctacgtgcaggcgtaccaatgggtacggcagtatttgatggcgctaaagaacagcaaatc
aaaggcttgctagaattagcaggtatgccaacctcaggtcagcaagtattgtttgatggt
cgtaccggtcaacaatttgatcgtcctgtaaccgtgggttatatgtacatgctcaaactc
aaccacttggttgacgacaaaatgcacgcacgttcaacgggttcttactcactggttacc
cagcagccattgggtggtaaagcccagtttggtggtcagcgcttcggtgagatggaagtg
tgggcacttgaagcttacggtgctgcttatacattgcaagagatgttgacggtgaaatcc
gatgacgtggaaggtcgtacccgcatgtataaaaacatcgtcgatggcgaacaaagcatg
tcagccggtatgccagaatcgttcaacgtattgaccaaagagattaagtcattgggtatt
aacattgagttaaaagatcatagcaaaagtaaaaactaa
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