Mycobacterium ostraviense: LTS72_01955
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Entry
LTS72_01955 CDS
T07946
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
mot
Mycobacterium ostraviense
Pathway
mot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mot00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LTS72_01955
09124 Replication and repair
03420 Nucleotide excision repair
LTS72_01955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mot03021
]
LTS72_01955
03400 DNA repair and recombination proteins [BR:
mot03400
]
LTS72_01955
Enzymes [BR:
mot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LTS72_01955
Transcription machinery [BR:
mot03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LTS72_01955
DNA repair and recombination proteins [BR:
mot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LTS72_01955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
UGT92228
LinkDB
All DBs
Position
complement(377322..378971)
Genome browser
AA seq
549 aa
AA seq
DB search
MTDGPLIVQSDKTVLLEVDHDLAGAARAAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALVSFSRYAVPQPLLVDIVDTMARYGRLQLVKNPAHGLTLLSLDRAVLEEVL
RNKKIAPMLGARIDEDTVVVHPSERGRVKQLLLKIGWPAEDLAGYVDGEAHPISLHEDGW
QLRDYQQMATDSFWSGGSGVVVLPCGAGKTLVGAAAMAKAQATTLILVTNIVAARQWKRE
LVARTSLTEDEIGEYSGERKEIRPVTISTYQMITRRTKGEYRHLELFDSRDWGLIIYDEV
HLLPAPVFRMTADLQSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAP
AECVEVRVTMTDNERMQYATAEPEERYRLCSTVHTKIAVVKSILDKHPGEQTLVIGAYLG
QLEELGAELNAPVIQGSTRTSEREALFDAFRRGEVSTLVVSKVANFSIDLPEAAVAVQVS
GTFGSRQEEAQRLGRLLRPKSDGGGAIFYSVVARDSLDAEYAAHRQRFLAEQGYGYIIRD
ADDLLGPAI
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgggccgttgatcgtgcagtccgacaagacggtgctgctcgaagtcgaccat
gacctggccggtgccgcacgcgccgcgatcgcgccgttcgccgagctggaacgcgcaccc
gagcatgtgcacacctaccgcatcaccccgctcgcgttgtggaatgcccgcgccgccggg
cacgatgccgaacaggtcgtcgatgcgctggtcagtttctcccgctacgccgtgccgcag
ccgctgctggtcgacatcgtcgacaccatggcccgctacgggcggctgcaactggtcaag
aatccggcacacggcctgacgctgctcagcctggaccgtgccgtgctcgaggaagtgctg
cgcaacaagaagatcgcacccatgctcggcgcccggatcgacgaggacaccgtcgtcgtc
caccccagcgagcggggcagggtcaagcagctgctgctcaagatcggttggcccgcagaa
gatctcgccggctacgtggacggtgaggcgcatccgatcagtctgcacgaggatggctgg
cagctgcgggattaccagcagatggccaccgactcgttctggtccggcggctccggggtg
gtggttctgccgtgcggcgcgggcaagaccctggtcggcgcggccgcaatggccaaagct
caggccacgacgctgatcctggtgaccaacatcgtggccgcgcggcagtggaagcgcgag
ctggtcgcccgcacctcgctgaccgaggacgagatcggcgaatactccggtgagcgcaag
gagattcggcccgtcaccatttcgacgtaccagatgatcacccgtcgcaccaagggcgaa
taccggcatctggaactcttcgacagccgtgactgggggttgatcatctatgacgaggtg
catctgctgccggcgccggtgttccggatgaccgccgacctgcagtctaagcggcgactg
gggctgactgccaccttgatccgcgaagacggccgtgagggcgacgtgttctcgctgatc
ggcccgaagcgctatgacgcaccctggaaagacattgaggcccaaggctggatcgcaccg
gcggagtgcgtcgaagttcgggtgacgatgaccgacaacgagcggatgcaatacgcgacg
gccgagcccgaggagcgctaccggctgtgctcgaccgtgcataccaaaatcgctgtggtc
aagtcgattctggacaaacaccccggcgagcagaccctggtgatcggcgcctacctgggt
cagctcgaggagctgggtgccgagctcaacgctccggtgatccagggatcgacgaggacc
agcgaacgcgaggcgttgttcgacgccttccgccgcggcgaggtctccacgctggtggtg
tccaaggtggccaacttctccatcgacttgccggaagccgctgtggcggttcaggtctcg
ggtacgttcggctcgcgtcaggaagaggcgcagcggttgggccggctgctgcggcccaag
tccgacggcggcggcgccatcttctactcggtggtggcccgcgacagtctcgatgccgaa
tacgccgcgcaccggcagcggttcttggccgagcagggctacggctacatcatccgcgac
gccgacgacctgttgggcccggcgatctag
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integrated database retrieval system
