Mycobacterium ostraviense: LTS72_04375
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Entry
LTS72_04375 CDS
T07946
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mot
Mycobacterium ostraviense
Pathway
mot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTS72_04375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mot03019
]
LTS72_04375
03009 Ribosome biogenesis [BR:
mot03009
]
LTS72_04375
Enzymes [BR:
mot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LTS72_04375
Messenger RNA biogenesis [BR:
mot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LTS72_04375
Ribosome biogenesis [BR:
mot03009
]
Prokaryotic type
rRNA helicases
LTS72_04375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
adh_short
LytR_C
Motif
Other DBs
NCBI-ProteinID:
UGT92635
LinkDB
All DBs
Position
911830..913545
Genome browser
AA seq
571 aa
AA seq
DB search
MVTPDNTPVASPETFVDLQIHPSVLRAIAAVGYESPTAIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDVTSTATQALILAPTRELALQVAEAFSRYGAHLPKLNVLPIYGGS
SYAVQLAGLRRGAQIIVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFADDVERI
LSDTPEYKQVALFSATMPPAIRKITTKYLHDPLEVTSKAKTATAENISQRYIQVAGPRKM
DALTRVLEVESFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQQQRERTITALRE
GGPKGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVS
PRERHLLKAIEKATRQTMTEAELPTVEDVNAQRVANFSDSITDALAKPGVDLFRKLVEDY
EREHDVPMADIAAALALQSRDGEAFLLAPEPPPERRGETRKPATDQRAERRRNGPQLSTY
RISVGKRHKIGPGAIVGAIANEGGLHRSDFGHISIGADFSLVELPAKLPRATLKKLETTR
ISGVLIDLRPERPADKARRSDSGTPRRKRVE
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggtcaccccggacaacacgcccgtcgcgtctcccgaaaccttcgtcgacctgcagatc
catccctcggtcctgcgggcgatcgcggctgtcggctacgagtcgccgacggccatccag
gccgcgaccatcccggcgctgatggccggctccgacgtggtggggctggcgcagaccggc
accggcaagaccgccgcgttcgcgatccctatcctgtccaaaatcgacgtcaccagcacg
gcgacccaggcgctgattctggcgcccacccgggagctggcgctgcaggtcgccgaggcg
ttcagccgctacggggcgcatctgcccaagctcaacgtgctgccgatctacggcgggtcg
tcttatgccgtgcagctggccgggctgaggcgcggcgcgcagatcattgtcggcacgccc
ggtcgagtcatcgaccacctggagcgcgggacgctggacctctcccgggtggactacctg
gtgctcgacgaggccgacgagatgctggccatgggtttcgccgacgacgtcgagcgcatc
ctttctgacaccccggaatacaaacaggtggccctgttttcggcgaccatgcccccggcg
atccgcaagatcaccaccaagtacctgcacgaccccctggaagtcacgtccaaagcgaaa
acagccaccgcagagaacatttcgcagcgctatatccaggtggccggtccgcgcaagatg
gacgccctcacccgagtcctcgaggtcgagtcattcgaggcgatgatcgtcttcgtccgc
accaagcaggcgaccgaggaggtcgccgaaaagctaagggcccgaggcttttccgcggcg
gccatcaacggcgacattccgcagcagcagcgcgagcgaacgatcacggcgctgcgtgaa
ggcggccccaagggcatcgacatcctggtcgccaccgacgtggcggctcgcggcctcgac
gtcgaacgcatatcgcatgtgctcaactacgacatcccgcacgacaccgagtcctacgtg
caccgcatcgggcgcaccggccgggccggccgttccggagccgcgctgttgttcgtctcc
ccgcgggaacgccacctgctcaaggcgatcgaaaaagccacccggcaaacgatgaccgag
gccgagttgcccaccgtcgaggacgtcaacgcccagcgggtggctaacttctccgattcg
atcaccgacgcgctcgcaaaacccggagtcgatctgttccgcaagctggtcgaggactac
gaacgcgagcatgatgtcccgatggccgacatcgccgcggccttggcgttgcagtcgcga
gacggcgaggcattcctgctggcacccgaaccaccacccgagcgacgcggcgagaccagg
aaacccgcaactgaccagcgtgccgaaaggcgaagaaacggcccgcagctgagcacgtac
cggatctcggtcggcaagcgccacaagatcggtccgggcgcgatcgtcggtgcgattgcc
aacgaaggagggttgcaccgcagcgatttcggccacatcagcattggggcggacttctcg
ctggtggagctgcccgccaagctgccgcgcgcgaccctcaaaaagctcgaaaccacccgg
atctcgggtgtgttgatcgacctgcggccggaacggccagccgacaaggcgcgccgctcc
gacagtggcacgccacgccggaaacgggtcgaatga
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