Mycobacterium ostraviense: LTS72_20680
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Entry
LTS72_20680 CDS
T07946
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mot
Mycobacterium ostraviense
Pathway
mot03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mot00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LTS72_20680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mot03021
]
LTS72_20680
03400 DNA repair and recombination proteins [BR:
mot03400
]
LTS72_20680
Enzymes [BR:
mot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LTS72_20680
Transcription machinery [BR:
mot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LTS72_20680
DNA repair and recombination proteins [BR:
mot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LTS72_20680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UGT90671
LinkDB
All DBs
Position
complement(4545169..4549119)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD
LAQLEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL
YRELQDRYGEYFTGAMGAESIQKLIENFDIDAEAESLREVIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVDGDTGEYQ
PAAPELPESGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPSAEIETELFGAHGWHPGE
PWIAETTLGRVLFNELLPPGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDRYEDRADKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPSDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGIVVE
LAERQPDGTLIRDPYIETSAYARTLGIDAVDEAGNVVVARGEDLGDPEIDALLAAGITQV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggcctggccactgcggaggacatc
cggcagtggtcctacggcgaggtcaagaagccggagaccatcaattaccgcacgctcaag
ccggagaaggatggcttgttctgcgagaagatcttcgggccgactcgcgactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgcgagcgttgcggtgtc
gaggtgacgcgcgccaaggtgcgccgcgagcggatgggccacatcgagttggccgcaccc
gtcacccacatctggtacttcaagggcgtgccgtcgcgcctggggtacctgctggacctg
gcgcccaaggacctcgagaagatcatctacttcgccgcatatgtgatcaccgcggtcgac
gaggagatgcggcataacgagctgtccacgctcgaggccgaaatgatggtggagcgcaag
gccgttgaggaccagcgggacgcggacttggaggcgcgtgcccaaaagctggaggccgac
ctggcccagctggaggccgagggcgccaaggccgacgcccggcgcaaggttcgcgacggc
ggcgagcgcgagatgcgccagctccgcgaccgtgcccagcgcgagctggaccggctggag
gacatctggaacaccttcaccaagctggcgcccaagcagctgattgtcgacgagaacctc
taccgcgagctgcaggaccgctacggcgaatacttcaccggcgccatgggtgcggagtcg
atccagaagctcatcgagaacttcgacatcgacgccgaagccgagtcgctgcgtgaggtc
atccgaagcggcaaggggcagaagaagcttcgcgccctcaagcgcctgaaggtggtcgcc
gctttccagcagtccggcaactcgccgatgggcatggtgctcgacgccgtcccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccggtttgccaccagcgacctc
aacgacctataccgccgggtgatcaaccgcaacaaccggctcaagcgactgatcgacctc
ggcgcacccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgcg
ctgttcgacaatggccgccgcggccgtccggtcaccgggccgggcaaccgtccgctcaag
tcgctgagcgatctgctcaagggcaagcagggccggttccgtcaaaacctgctcggcaag
cgtgtcgattactcgggcaggtccgttattgtggtcggtccgcagctcaagctgcatcag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgtcagcgt
ccgcaggtgtgggatgtgctggaggaggtcatcgccgagcacccggtgttgctgaaccgg
gcgcccaccctgcaccggctgggtatccaggcgttcgagccgatgctgatcgagggcaag
gcgatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtccgccgaggcgcaggcagaggcccgcatcctgatgctg
tcgtccaacaacatcctgtcgcccgcttccggtcgcccgttggccatgccgcgtctggac
atggtgaccgggttgtactacttgaccaccgaggtcgacggcgacaccggcgaataccag
ccggccgcacccgagcttcccgagtcgggggtgtactcttcgccggccgaagccatcatg
gcggccgaccgcggtgtgctctcggtgcgggccaagatcaaggtccggctgacccagttg
cgtccgtcggccgagatcgagaccgagctgttcggggcccacggctggcatccgggcgag
ccgtggattgccgagacgacgctgggccgggtgctgttcaacgagctgctgccgccgggc
tatccgttcgtgaacaagcagatgcacaagaaggttcaggccgcgatcatcaacgacctg
gccgagcgctacccgatgatcgtggtggcgcagaccgtcgacaagctcaaggacgccggg
ttctactgggcaacccgaagcggtgtcacggtctcgatggccgacgtgctggttccgccc
cgcaagaaggagatcctcgaccgctacgaggatcgcgccgacaaggtcgaaaagcagttc
cagcgtggtgcgttgaaccacgacgaacgcaacgaggccttggtggagatctggaaggaa
gccaccgacgaggtgggtcaggcgctgcgggagcactatcccagcgacaacccaatcatc
accatcgtcgactcgggtgccacgggtaacttcacccagacccggacgctggccggaatg
aagggtctggtgaccaaccccaagggtgagttcatcccgcgtccggtcaagtcgtcgttc
cgtgagggactgaccgtgctggagtacttcatcaacacccacggtgctcgaaagggcttg
gccgacaccgcgttgcgtaccgccgactcgggctacctgacccgtcgtctggtggacgtg
agccaggacgtcatcgtgcgcgagcacgactgcggcaccgagcgcggcatcgtcgtcgag
ctggccgagcgtcagcccgacggaacgctgatccgcgacccgtacatcgaaacctcggca
tacgcaaggactctgggtatcgacgcggtcgacgaggcgggcaacgtggtcgtcgcgcgc
ggcgaggatctgggtgatccggagatcgatgcgctgctggccgcggggatcacgcaggtg
aaggtgcgttcggtgctgacctgcaccaccggcaccggcgtgtgcgcgacgtgttatggg
cgctcgatggccaccggcaagctggtcgacatcggcgaagccgtcggtattgtggccgcc
cagtccattggtgagccgggcacccagttgaccatgcgtaccttccatcagggtggtgtc
ggcgaggacatcaccggcggtctgccacgggtgcaggagctgttcgaggcccgggtgccg
cgcggcaaggcgccgatcgccgacgtcaccggccgcgtcaggctggaagacggtgagcgc
ttctacaagatcaccatcgtgcccgacgacggcagcgaggaggtcgtgtacgacaagctc
tccaagcggcagcggctgcgggtgttcaagcacgaggacggctcggagcgggtgctctcc
gacggcgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgggtccagggtccccgcgaggtgcagatccacctggtccgcgaggtccaggag
gtctaccgcgcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgggtcaccatcatcgactccggctcgacggagttcctgcctggctcgttg
atcgaccgtgccgagttcgaggcggagaaccgtcgggtggtggccgagggcggcgagccc
gccgccggccgtccggtgctgatgggtatcaccaaggcgtcgctggccaccgactcgtgg
ctgagcgcggcgtcgttccaggagactacccgggtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaatggtctgaaggagaacgtgatcatcggcaagctgattccggcc
ggtaccggcatcaaccggtatcgcaacatcgcggtgcagccgaccgaggaagcccgcgca
gccgcctatacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcc
accggcgccgccgttccgctggacgactacggctacagcgactaccggtaa
DBGET
integrated database retrieval system
