Methanogenium organophilum: OU421_12770
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Entry
OU421_12770 CDS
T08653
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mou
Methanogenium organophilum
Pathway
mou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU421_12770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mou03019
]
OU421_12770
Messenger RNA biogenesis [BR:
mou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OU421_12770
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WAI01265
UniProt:
A0A9X9S5G4
LinkDB
All DBs
Position
complement(2612387..2613730)
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AA seq
447 aa
AA seq
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MDVEIIAVGGYNEVGRNMTAVRCGKEIVIFDMGLRLDQIMIHEDAEVENLHSLDLIEMKA
IPDDTIMNTVEGSVKAIVCTHGHLDHIGALPKLAHRYDAPIIGTPYTAALIRQQIEGEKR
FVVNNPVFDLPAGKKYRYEISQNLSLEFITVQHSIIDTVMAVLHTPRGAVVYANDFKLDR
TPVLGDPPNFARMREVGKEGVLALITESVNVNMPGRCPSERIAQRLVRDVMTCYEDDKSA
MLVGCFASNIARVKMIAECAHEIGRKPVLLGRSMERYSSTAEQMKLVGFPKGMTMRGNRR
TVDKMFRTIMKEGKDKYVPIVTGSQGEPGAILTRVASGQTPFKIEKGDKILYSAKVIPNP
MNYGQRHNQEVLLRMKGARLFADLHVSGHAYREEHYEVLHLFNPQHVIPSHGDIDMTGGY
LKLAEDCGYTLNNDAHILRNGQRLLIN
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgagataattgctgttggcggatataacgaagtcggcagaaatatgaccgcg
gtgcggtgcgggaaggagattgtcatttttgatatgggtctccgtcttgatcagattatg
atccatgaggatgcagaggttgaaaatctgcattctcttgatttaattgagatgaaggca
attcctgacgatacgataatgaatacggtggaaggcagtgtaaaggcaattgtctgtacg
catggtcaccttgaccatatcggtgcacttccaaaacttgcacaccgctatgatgcaccg
attattggtactccgtatacagcggccctgattcggcagcagattgaaggggaaaaacgg
tttgttgtgaataatccggtttttgatcttccggcaggaaagaaataccggtatgaaatc
tcgcagaatctctcccttgaatttatcaccgtacagcattccatcattgatacggtaatg
gctgtactccacacgccgcgtggtgctgtagtgtatgccaatgatttcaaactggaccgg
acccctgttctgggagatcctcccaatttcgcccggatgcgcgaagtaggaaaagagggt
gtgctggcactgatcacagagagtgtgaatgtgaatatgccagggcgctgtcccagcgag
cgtattgcccagcgtctggtcagggatgtaatgacctgctatgaggatgacaaatctgca
atgcttgtgggatgttttgcctccaatatcgcacgggtaaaaatgatcgcagaatgcgcc
catgaaatcggacgaaaaccggtgcttctcggccgttccatggagcggtattcatcgact
gcagaacagatgaaacttgtcgggtttccgaaagggatgaccatgcgtggaaaccgccgc
acggtggacaagatgttccgcacgatcatgaaggaagggaaggacaagtatgtcccgatt
gttacgggaagtcagggagaaccgggtgcaattctcactcgtgttgccagcggacagaca
ccgttcaagattgagaaaggggataagatcctctacagtgcaaaggtgattccgaatcct
atgaattacgggcagcggcataatcaggaagtgctcctcaggatgaaaggtgcacgtctc
tttgctgatctccacgtgagtggacatgcataccgcgaagaacattatgaagtgctgcat
ctgttcaatccgcagcatgttatcccgtctcacggtgatattgatatgaccggtggttac
ctgaagcttgcagaggactgcggttataccctgaacaatgatgcccatatactgagaaac
gggcagagattactaataaattag
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