Candidatus Methylomirabilis oxygeniifera: DAMO_0393
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Entry
DAMO_0393 CDS
T02155
Name
(GenBank) Helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mox
Candidatus Methylomirabilis oxygeniifera
Pathway
mox03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DAMO_0393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mox03400
]
DAMO_0393
Enzymes [BR:
mox01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DAMO_0393
DNA repair and recombination proteins [BR:
mox03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DAMO_0393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
HHH_5
Helicase_RecD
UvrD-helicase
SLFN-g3_helicase
AAA_16
DEAD
T2SSE
PIF1
PhoH
AAA_22
AAA_28
nSTAND3
AAA_23
NTPase_1
NPHP3_N
TrwB_AAD_bind
ABC_tran
Pox_A32
Mg_chelatase
AAA
NACHT
cobW
TsaE
AAA_5
HHH_2
bpMoxR
ATPase_2
KTI12
AAA_29
Rad17
Motif
Other DBs
NCBI-ProteinID:
CBE67477
UniProt:
D5MJB2
LinkDB
All DBs
Position
complement(344238..346493)
Genome browser
AA seq
751 aa
AA seq
DB search
MPARSYDTLQGTLERITYVNEENHYVVARLQVSGRRDLATIVGNLPTVTPGETLKLTGEW
IQHNRYGEQFKVEAFETISPATLTGIEKYLGSGLIKGIGPIFAKRLVEVFGIDTLRIIEE
EPSRLLTVDGIGEVRLQRIRTAWEEQKEIREVMVFLQGHGVSSAYAAKIFKAYGKSSIAV
VQENPYRLAKDIYGIGFKTADRIAQAIGIEPHSPLRVEAGVIHVLNELAGEGHVYYPLDG
LTKASAGILEVDEELVTQAVERLRREERVVCLPVLRTQTDEPEPQGVAAYLASLYAAEEG
VARRLQVLTEGGELPADIDIERAILWAEQVNRLHLAEQQREAIRAALIRKLLVITGGPGT
GKTTILRCILQILEKKHRRMLLCSPTGRAAKRMSEATGREAKTIHRLLEFSPKDGRFKRD
QHRPLDADLVIVDEASMIDIVLMNSLLKAIPPAAGLILVGDVDQLPSVGPGAVLRDIIAS
GLVQVIRLSEIFRQARESQIVVNAHRINRGEMPFCTDWEAQEHGDCYLLAKQDALEVQAA
ILELAARGLPSRHRVDTLEELQILSPMQKGPIGAMQLNQALQALLNPSGPELLRAGRLYR
RGDRVMQIRNNYDKDVYNGDIGRIVTLNLEDREVTVRFDDRHVTYDFNELDELVLAYAVT
IHKSQGSEYPVVVIPMHTAHYVMLQRNLLYTAITRGRRLVVLVGTKKAIAIAVKNQKIQL
RYTGLVARLQKGLSACNAETESRELSLQLAE
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcgcgatcatacgacacgctccagggaacgctggagcgaatcacgtacgtcaac
gaagagaaccactatgtggtggccaggctccaggtatccggacgccgggacctggccacc
attgtaggcaacctgccgaccgtcacgccgggcgagactctcaagctgaccggcgagtgg
atccagcacaaccgatacggcgaacagttcaaggtcgaagccttcgaaaccatctccccc
gccacgctcaccggtatcgagaagtatctgggctccggcctcatcaaggggatcggcccg
atctttgccaaaaggctggtggaggtcttcggtatcgacaccctgcgtattatcgaggag
gagccctcccgcctgctcacggtggatgggatcggcgaggttcgacttcagcggatccgg
accgcctgggaggagcagaaagagatccgggaggtgatggtctttctgcagggccatggc
gtctcctccgcctatgccgccaagatcttcaaagcctacggaaaatcctccatcgctgtt
gtccaggaaaacccctaccggctggccaaggacatctatgggatcggcttcaagaccgcc
gaccggatcgcccaggcgatcgggattgagccgcattcgccgctgcgggtggaggccggg
gtcatccatgtcctgaacgagctggccggggagggccacgtctactacccccttgacggc
ctcacgaaagcgagcgccggtattctggaggtcgacgaggagctggtgacccaggccgtt
gaacggcttcgacgcgaggaacgggtggtctgcctgcctgtgcttcgtacacagacggat
gagcctgaaccgcaaggggtggcggcctacctcgcctcgctgtatgcggcggaggaaggg
gtcgcccggcgcctgcaggtcctgactgaagggggcgagctccccgcagacatcgacatc
gaacgcgccattctctgggcggagcaggtgaacaggctacacttggcggaacaacagagg
gaggcgatccgtgcggccctcatacgcaagctgttggtcatcaccggcggccctggtacc
ggcaagacgaccatcctgcggtgcatcctgcagatcctggagaaaaaacaccgccggatg
ctcctctgctctcctacggggcgggcagcaaagcgaatgagcgaggccacgggtcgggaa
gccaagaccatccaccgcctcctggagttcagtcctaaggatggtcggttcaagcgagac
cagcacagaccgttggatgccgatctggtgatcgtggacgaggcctcgatgatcgacatc
gtgctgatgaactcccttctgaaggccatcccgccggctgccggtctgattctggtgggt
gatgtggaccagctcccatcggtagggccgggcgcggtgctgcgcgacatcattgcgtcg
ggccttgtgcaggtcatccgactatccgagatcttccggcaggccagggagagccagatt
gtggtcaatgcccaccggatcaatcggggggagatgccgttctgcacggattgggaggcg
caggagcacggcgactgttacctgctcgccaaacaagacgcgctggaggtccaggcggcg
atcctggagctggcggcgcgggggctgccttcacggcatcgcgtcgatacgctggaggag
ttacagatcctgagcccgatgcagaaagggccgatcggcgccatgcaactgaatcaggcg
ctgcaggcgctcctaaacccgtcagggccggagctgcttcgcgccggtcgcctctaccgg
cgtggggatcgcgtgatgcagatcaggaataactacgacaaggacgtctataacggcgac
atcggccggatcgtcacgctcaacctggaagaccgcgaggtcactgtccggtttgacgat
cgccacgtcacctacgacttcaacgagctggatgaactggtgctcgcctacgctgttacc
atccacaagagccagggcagtgagtatccggtcgtcgtcatcccgatgcacacggcgcac
tacgtcatgcttcagcgaaacctcctgtacaccgccattacgcgaggcagacgcctggtc
gtcctggtaggcaccaaaaaggcgatcgccatcgccgtgaagaatcagaagatccagctt
cgctacaccggcctcgtagctcgactgcaaaagggcctgtctgcgtgcaacgcagagacg
gaaagccgggaactgtcactccagcttgccgaatga
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