Candidatus Methylomirabilis oxygeniifera: DAMO_0581
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Entry
DAMO_0581 CDS
T02155
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mox
Candidatus Methylomirabilis oxygeniifera
Pathway
mox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAMO_0581 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mox03019
]
DAMO_0581 (pnp)
03016 Transfer RNA biogenesis [BR:
mox03016
]
DAMO_0581 (pnp)
Enzymes [BR:
mox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DAMO_0581 (pnp)
Messenger RNA biogenesis [BR:
mox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DAMO_0581 (pnp)
Transfer RNA biogenesis [BR:
mox03016
]
Prokaryotic type
tRNA degradation factors
DAMO_0581 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
CBE67656
UniProt:
D5MKK9
LinkDB
All DBs
Position
503261..505348
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AA seq
695 aa
AA seq
DB search
MSSRVERIIEGKPLSIEAGRVARQADGAVLVRYGDTVVLVTVVASKQMRQGIDFFPLTVD
YQERAYAAGKIPGGFFKREGKPHDKETLTSRLIDRPLRPLFPDGYRNDVQIIATVLSADQ
QNDPDVLAVLGASAALTIAPIPFLGPIGAVRVGRVEGKLLLNPTYAQMEGSDIDMVVAGT
RSAVVMLEAGANEIPEDVMFEAIEFGHKGIQPMIDMVSELAQALRVEKVPFQVSPPDPQL
RDRVSALARQGLRALAGIAEKEEHRSHRQQLFDEVMAAFSDEPDDRKGVVRGLFEAIEHD
ELRRMILEEGRRADGRSLEDVRPITAEVGVLPRTHGSALFTRGQTQALVTTTLGTSEDEQ
RLDDLEGEGTKRFMLHYNFPPFSVGEVRFMRGPGRREIGHGALAERALLAALPPKEEFSY
TLRIVSDILESNGSSSMATVCGASLSLMDAGVPIRSAVAGVAMGLVVEDERAAILTDIIG
LEDHLGDMDFKVAGTRKGITALQLDIKTQGIAPSLMPKALGQARRARLHILDQMDRALTE
PRSNISVYAPRIITIMIPVDKIRDVIGPGGKVIRGIVADSGAKIDVSDDGRIEIASVDGE
AAQKALSIISKIVEVPEVGKIYQGKVVKIMDFGAFVQILPGTDGLLHISQISEQRVKRVE
DVLSEGEEIMVKVIDVDKNGKIRLSRKEVSQAEAQ
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcgggtcgagcggatcatcgaagggaaaccattaagtatcgaggcggggcgt
gtagccaggcaggccgatggcgccgtgttggttcggtacggcgataccgttgtgctggtt
acagtggtggcttcgaaacagatgcggcaggggatcgatttctttccgctgactgttgat
tatcaggaacgggcctacgctgcaggcaaaatccctggcggttttttcaagcgggagggc
aagcctcatgataaggagaccttgacctcccgcctgatcgatcgcccactccgtcccctt
ttcccggatggctaccggaacgatgtccagattattgccacagtcctgtctgcggaccag
cagaacgaccccgacgtgctggcggtattgggcgcctccgccgctctgaccattgcgcct
attccgttccttggaccgatcggcgcggtccgggtgggccgggtggagggcaagctgctc
ctcaatcccacctatgcccagatggaaggatcagacatcgatatggtcgtcgcagggacc
cgaagcgcggttgtgatgcttgaggccggcgccaacgagatccctgaggacgtcatgttt
gaggcgatcgaattcggccataagggcattcagcctatgattgacatggtgtcggaactg
gctcaagcgctccgggttgaaaaggtgcccttccaggtgtcgccgccggatccacagttg
cgtgatcgcgtaagcgcgctggcccgccagggacttcgggcgctggctgggattgccgaa
aaggaggagcatcgcagccatcggcagcagctcttcgatgaggtcatggccgcgttcagc
gatgagccggacgaccgcaagggcgtcgtcagggggctgttcgaagcgatcgagcacgac
gagctgcgccgaatgatcctggaggaggggaggcgtgcggatgggcgatcgctcgaggat
gtccggccgatcacggccgaggtcggggtcctgccaaggactcacggatcggccctcttc
accaggggtcagacccaggcgctcgtgacgacgacgctcggtacctccgaagatgagcag
cgtctggatgatctcgagggggagggtaccaagcggttcatgcttcattacaactttcca
ccgttcagtgtgggcgaggtcagattcatgcgtggtccgggtcggcgcgaaatcgggcat
ggggcacttgccgagcgggcccttttggcggcgttgccgccgaaggaagagttttcgtat
actcttcggatcgtgtcggatatcctcgaatcgaatggttcgtcgtctatggccacggtg
tgcggagctagtctcagcctgatggatgccggggtgccgattcgatcggcggtggccggg
gtggcgatggggctcgttgtggaggatgagcgggcggcgatactcaccgatattatcgga
ctcgaggatcaccttggcgacatggacttcaaggtggccggtacccggaaagggattacg
gcgctgcaactggatatcaagacccaagggatcgcgccgagtctcatgccgaaggcgctg
ggtcaggccaggcgcgcccgccttcacatcttggatcagatggaccgcgcccttacagag
ccgagatccaacatctcggtgtatgccccgcgtatcatcacgataatgatccccgtggat
aaaattcgtgatgtcatcggcccgggcggcaaggtgatccgtgggattgttgcggactcc
ggggcgaagatcgatgtctcggacgacggacggatcgagatcgcgtcggtcgatggagag
gcggcgcagaaggcgttgtcgattatcagtaagatcgtcgaggttcccgaggtaggcaag
atctatcaggggaaggtcgtcaagattatggatttcggcgccttcgttcagattcttccc
ggcaccgatggcctgctgcatatctctcagatttccgaacagcgggtaaaaagggtcgag
gatgtcttgtcggaaggggaagagatcatggtaaaggtgatcgatgtcgacaagaatggg
aagatccggttgagtcggaaagaggtgtcgcaggctgaggcgcagtag
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