Candidatus Methylomirabilis oxygeniifera: DAMO_1577
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Entry
DAMO_1577 CDS
T02155
Name
(GenBank) conserved protein of unknown function
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mox
Candidatus Methylomirabilis oxygeniifera
Brite
KEGG Orthology (KO) [BR:
mox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mox03016
]
DAMO_1577
Enzymes [BR:
mox01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DAMO_1577
Transfer RNA biogenesis [BR:
mox03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DAMO_1577
Prokaryotic type
tRNA splicing ligases
DAMO_1577
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
FeS_hyd_N
Motif
Other DBs
NCBI-ProteinID:
CBE68637
UniProt:
D5MFV6
LinkDB
All DBs
Position
complement(1336716..1338158)
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AA seq
480 aa
AA seq
DB search
MSKVVQKLDDYRWLLPQDYKPGMRVPGIIYADEVLMEAIMKDLSLEQVANGAFLPGIVKA
SFAMPDIHQGYGLPVGGVVATDITDGVVSPGAVGYDINCGVRLLRTELTQEEVRPRLKEL
VLALFHEIPTGVGSRGRIRLSKKEAEAPLLKGAAWAVKQGYGEPADLACIESGGCLPGAD
PDAVSHKALERGSSQLGTLGSGNHFLEVQTVAEIYDPHAAEVLGLFEGQVTVMIHTGSRG
LGHQVCTDSLVEMERAVIKYGIDLPDRQLACTPWTSREAKAYLGAMRAAANFAWNNRQCL
AHWTKEVLLKVLGVSPGALGLSTVYDVAHNIVKVEEHEVDGRRMKLAVHRKGATRAFPPG
HPELPAHYRAIGQPVLIPGDMGRASFVLVGTGAMEQTFGSTCHGAGRVMSRHAAIRAAKG
RAIHRELENQGIIVMASGGESLAEEMPEAYKDATQVVTVVHRAGLSRMVARLRPMGVIKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggttgtacaaaaacttgacgactatcgatggctgctcccgcaagactacaaa
ccggggatgcgggttccaggaatcatctatgccgatgaggtcctgatggaggcgatcatg
aaggatctctccctggaacaggtggcgaatggcgccttcctgccggggatcgtcaaggcc
tcattcgccatgccggacatccatcagggatacggtctgccggtcggtggagtggttgcc
accgatattacggatggcgtcgtgtctccaggcgcagtcgggtacgatatcaactgcggg
gtccgattgcttcgcacggagctgactcaggaggaggtgcggccaaggctgaaggaactg
gtcctcgccctctttcatgaaattccgacaggagtcggctcgcgcggccggattcgcctg
agcaaaaaagaggcggaagcgccgctgctcaagggcgcagcatgggcggttaagcagggg
tacggagagccggcagatctcgcctgtatcgaatccggtgggtgtcttccgggtgcggac
ccggatgctgtgagccataaggcccttgagcggggaagcagtcagcttggaacgttgggc
tcaggcaatcattttctggaggtccagacggtcgccgagatttacgatccacacgctgcc
gaggtcctcggcctgtttgaaggtcaggtgacggtgatgattcataccggctctcgaggt
ttggggcatcaggtctgcacagattctctagtcgagatggagcgggcggtcatcaagtat
gggatcgatctcccagaccgacagctcgcctgcacgccttggacgtcgcgcgaggccaag
gcatacctgggcgcgatgcgggccgccgctaactttgcctggaataatcgccaatgtttg
gcccactggaccaaggaggtgttactgaaggtcctgggtgtctcgcccggagcattaggg
ttgtcaacggtctatgatgtggcccacaacatcgtcaaggtagaggagcacgaggttgac
ggcagacggatgaagctggcggttcatcgcaaaggagcgacccgagcgtttccgcccggg
cacccggagctaccggctcactaccgggccatcggtcaacctgtgctgatcccgggcgac
atgggccgcgcctcatttgtgctggtgggaacgggcgctatggagcagaccttcgggagc
acctgtcacggcgccggcagggtgatgagccgtcatgccgctattagagcggctaagggt
cgggccattcatcgggagctggagaaccaggggattattgtcatggcgtctggcggcgaa
tcgttggcagaggagatgcccgaggcgtataaggatgcgactcaagtggtgacggttgtg
caccgcgccggcctctccaggatggtcgcccgactccgccccatgggcgtgatcaagggg
tga
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