Microbacterium oxydans: CVS54_00843
Help
Entry
CVS54_00843 CDS
T06672
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
moy
Microbacterium oxydans
Brite
KEGG Orthology (KO) [BR:
moy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
moy03016
]
CVS54_00843 (rtcB)
Enzymes [BR:
moy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CVS54_00843 (rtcB)
Transfer RNA biogenesis [BR:
moy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CVS54_00843 (rtcB)
Prokaryotic type
tRNA splicing ligases
CVS54_00843 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AZS39533
UniProt:
A0A3S9WHP6
LinkDB
All DBs
Position
complement(870607..871776)
Genome browser
AA seq
389 aa
AA seq
DB search
MERLSARLLSWASLIDEKTLAQAHTTARMPFIHPHLALMPDAHLGKGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTQFTRSDLDGRELAELREQIERAIPLSAGRYNRKVVATAEPRI
AELEQLAEKNGFDPAQYAGNWRLQLGTLGSGNHFIEVSVDELDRVWLFLHSGSRGVGNKI
AGHHIGVAQRLAKQWWIDLPDPDLAYLVEGTPEFTRYIRELRWAQHFALLNREEMMDRVI
RQVSEFLGTPVEEQERINCHHNFTESEKHYGKQVWVSRKGAIQADAGRPGLIPGSMGTAS
YVVEGLGDPQSLNSSPHGAGREYSRSAARRTFTHEQLRVAMAGIEFRDTDAFIDEIPQAY
KPIDRVMADAASLVSIRHTLRQVVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctctccgcacggctgctgtcgtgggcgtcactgatcgacgagaagacactc
gctcaggcgcacaccacggcccgcatgccgttcatccacccgcacctggcgctgatgccg
gatgcgcacctcggcaagggggcgacggtcggctcggtcatcccgacgctcggcgcgatc
atccccgccgccgtcggcgtcgacatcggctgcggcatgatcgccgtccgcacgcagttc
acgaggagcgacctcgacggccgcgaactcgccgagctccgggagcagatcgaacgtgcc
atcccgctgtcggccggccggtacaaccgcaaggtcgtggccacagccgagccgcgcatc
gccgagctcgagcagctggcagagaagaacggtttcgaccccgcacagtacgccgggaac
tggcgcctgcagctgggcacattgggatccgggaaccacttcatcgaggtgtcggtggat
gagctcgaccgggtgtggctgttcctgcactcggggtcgcgaggcgtcggcaacaagatc
gccggccaccacatcggtgtcgcgcagcggctcgcgaagcagtggtggatcgacctcccc
gaccccgacctggcctatctcgtcgaaggcacaccggagttcacccgatacatccgggag
ctgcggtgggcacagcacttcgccctgctgaaccgggaggagatgatggatcgggtcatc
cgccaggtgtcggagttcctcggcactccggtcgaggagcaggagcggatcaactgccac
cacaacttcacagagtcggagaagcactacggaaagcaggtgtgggtgtcccggaagggc
gccatccaggcggacgccggtcgtccggggctgatccccggatcgatgggcaccgcctcg
tacgtggtggaagggctcggtgacccgcagtcgctgaactcctcgccgcacggcgccggc
cgggagtactcgcggtccgcggcgcgacggactttcactcacgagcagctacgtgtggcg
atggccggcatcgagttccgtgacaccgacgcgttcatcgacgagatcccccaggcgtac
aagccgatcgaccgggtgatggcggatgccgcgagcctcgtgtcgatccggcacacgctg
cggcaggtcgtcaacgtgaagggcgattga
DBGET
integrated database retrieval system
