Microbacterium oxydans: CVS54_00926
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Entry
CVS54_00926 CDS
T06672
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
moy
Microbacterium oxydans
Pathway
moy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
moy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVS54_00926 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
moy03021
]
CVS54_00926 (rpoC)
03400 DNA repair and recombination proteins [BR:
moy03400
]
CVS54_00926 (rpoC)
Enzymes [BR:
moy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVS54_00926 (rpoC)
Transcription machinery [BR:
moy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVS54_00926 (rpoC)
DNA repair and recombination proteins [BR:
moy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVS54_00926 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AZS39616
UniProt:
A0A3Q9J2M7
LinkDB
All DBs
Position
955034..958909
Genome browser
AA seq
1291 aa
AA seq
DB search
MLESTTFDELRIGLATADHIRAWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEEARHRDLGTQENNIRLELKTLGDRRDAKIAERLAKLEEE
LAALEAEGAKADAKKKVKDAAEKEMSLIRKGADEAILKLERVWEDFRTLEVGALRPEDDV
FHELQDRFGQYFEAYMGAESIQRRLAAFDLEAEAENLRLQISEGKGQRKIRAIKRLKVVS
SFLETGMSPASMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVKEGATGEGR
AFGSVGEAILAKDEGSLDLQAKIRIRIPGLTFLEGEAPEGYERHGLVDASLGQAIFNDTL
PKGYPFVREQADKNKLSQIVNKLAEEYPKVETAASLDRIKDAGFYWATRSGVTVALSDIL
TPPNKAEIVAGYEKQAAKVQSQYEKGLTTDSERRQELIKIWTEATDEVQAAMKANFPEDN
TINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGTR
KGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTSKGLELPIAAPNSQGELVRDANVE
NSVFARTLASAVVDSKGEVLAEAGEDVGDVLIDKLVALGVETIKVRSVLTCDSAVGVCAQ
CYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEADGRIAIDETDKGKKVILTPDSGDEPVIYPVLKRATLLVEDGQHVTV
GQPILVGTLDPKEIMRVMGAREVQRYLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHADTTLLPGEMVDLKRYQSINREAVAEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTEAAMQGKRDPLVGLKENVIIGKLIPAGTGLSKYRDVTVEATEEAKSERYPNRI
FASDGAYADGDFGYVDFDAFSTDDITPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgagtccacaactttcgatgagcttcgcatcggcctggcgaccgcagaccacatc
cgcgcgtggtcctacggcgaggtcaagaagcccgaaaccatcaactaccgcaccctcaag
ccggagaaggacggtctcttcggagagcagatcttcggcccgtcccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagagctccgtccgtcgtgagcgcatgggtcacatcgagctcgccgctccc
gtcacccacatctggtacttcaagggcgtgccctcgcgcctgggctacctgctcgacatg
gcaccgaaggacctcgagaaggtcatctacttcgccgcctacatggtcatctcggtcgat
gaggaagctcgtcaccgcgacctgggcacgcaggagaacaacatccgtctcgagctgaag
acgctcggcgaccgccgcgacgccaagatcgcggagcgcctggccaagctggaggaggag
ctcgctgctctcgaggcggagggtgccaaggccgacgccaagaagaaggtcaaggacgcc
gccgagaaggagatgtcgctcatccgcaagggtgccgacgaggcgatcctgaagctggag
cgcgtgtgggaggacttccgcacgctcgaggtcggcgcactccgtccggaggacgacgtc
ttccacgagctgcaggaccgcttcggtcagtacttcgaggcctacatgggtgccgagtcg
atccagcgtcgtctcgcggcgttcgacctcgaggccgaggcggagaacctgcgtctgcag
atctccgagggcaagggccagcgcaagatccgtgcgatcaagcgcctgaaggtcgtcagc
tcgttcctcgagaccgggatgagcccggcgtcgatggtcctggacgtcgtcccggtcatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtcttcgtcgtctgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcgcatgctgcaggaggccgtggacgca
ctgttcgacaacggtcgccgtggtcgccccgtcaccggtaccggcaaccgtgccctgaag
tcgctcagcgacatgctgaagggtaagcagggtcgtttccgtcagaacctgctcggaaag
cgtgtcgactactccggccgttcggtcatcatcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggctctggagctcttcaagccgttcgtcatcaagcgtctg
atcgacctcggtcactcgcagaacatcaaggccgccaagcgtgccgtcgagcgcacccgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgtccggtgctgctcaaccgt
gcacccaccctgcaccgtctgggcatccaggcgttcgagccccagctcgtcgagggcaag
gccatccagctgcacccgctcgtctgcgcggcgttcaacgccgacttcgacggtgaccag
atggctgtccacctgcccctgtcggtcgaggctcaggccgaggcccgcgtgctgatgctc
gcgtcgaacaacatcctgaagccgtcggacggccgcccggtcaccctgccttcgcaggac
atgatcatcggtctgcaccacctgaccacggtcaaggaaggcgcgaccggcgagggccgt
gcattcggttcggtgggcgaggcgatcctggccaaggacgagggctccctcgacctgcag
gcgaagatccgcatccgcatccccggcctgacgttcctcgagggcgaagcccccgagggc
tacgagcgtcacggtctcgtcgacgcctcgctgggtcaggcgatcttcaacgacacgctg
ccgaagggctacccgttcgtccgcgagcaggctgacaagaacaagctgtcgcagatcgtc
aacaagctggccgaggagtaccccaaggtcgagacggctgcgtcgctggaccgcatcaag
gacgccggcttctactgggcaacgcgctccggtgtgaccgtcgccctgagcgacatcctc
acgccgccgaacaaggcggagatcgtcgcgggctacgagaagcaggccgcgaaggtccag
tcgcagtacgagaagggtctgacgaccgactctgagcgtcgccaggagctcatcaagatc
tggaccgaggccaccgacgaggttcaggccgccatgaaggcgaacttccccgaggacaac
accatcaaccgcatggtgtcgtcgggtgctcgtggtaactggctgcagatccggaacatc
gccggtatgcgtggtctggtgaacaaccccaagggtgagatcatcccgcgtccgatcatc
tcctcgtaccgcgagggtctgtcggtggcggagtacttcatcgcgacgcacggtacccgt
aagggtctcgccgacaccgctctgcgtaccgccgactcgggttacctgacccgtcgtctg
gtggacgtctcgcaggacgtcatcatccgcgaagaggactgcggcacgtcgaagggcctc
gagctcccgatcgccgctccgaactcgcagggtgagctggtgcgcgacgcgaacgtcgag
aactcggtgttcgcccgtacgctggcctcggccgtggtcgacagcaagggcgaggttctc
gccgaagccggtgaggacgtcggtgacgtgctgatcgacaagctcgtcgctctgggtgtc
gagaccatcaaggtgcgctcggtcctgacctgcgactccgccgtcggtgtgtgtgcacag
tgctacggccgttcgctcgcgaccggaaagaccgtcgacatcggcgaggccgtcggcatc
atcgcggcccagtcgatcggtgagcccggtacccagctgacgatgcgtaccttccacacg
ggtggttcggcatcggcggatgacatcacgcagggtctgccccgcgtgcaggagctcttc
gaggcgcgtacccccaagggcgcgtcgccgatcgccgaggccgacggccgcatcgcgatc
gacgagaccgacaagggcaagaaggtcatcctcacgcccgacagcggcgacgagcccgtc
atctacccggtgctgaagcgtgccacgcttctcgtcgaggacgggcagcacgtcacggtc
ggtcagccgatcctggtgggcacgctcgaccccaaggagatcatgcgcgtcatgggtgct
cgcgaggtgcagcgttacctcgtcggcggcgtccagggcgtgtaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtccgtcagatgctccgcaaggtcaccgtc
gtcgatcacgccgacacgaccctgctcccgggtgagatggtcgacctcaagcgctaccag
tcgatcaaccgcgaggctgtggcagagggcaagcgccccgcgtccggccgtccggagctg
atgggtatcacgaaggcgtcgctcgcgaccgagtcgtggctgtcggccgcctccttccag
gagacgacccgcgtgctcaccgaggctgcgatgcagggcaagcgcgacccgctggtcggt
ctcaaggagaacgtcatcatcggtaagctcatccccgccggaaccggtctctcgaagtac
cgcgacgtcacggtcgaggccacagaggaagccaagagcgagcgctacccgaaccggatc
ttcgcatccgacggtgcgtacgccgatggtgacttcggctacgtcgacttcgacgcgttc
tcgacggacgacatcacccccggcacctacaactga
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