Microbacterium oxydans: CVS54_01982
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Entry
CVS54_01982 CDS
T06672
Symbol
deaD_1
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
moy
Microbacterium oxydans
Pathway
moy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
moy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVS54_01982 (deaD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
moy03019
]
CVS54_01982 (deaD_1)
03009 Ribosome biogenesis [BR:
moy03009
]
CVS54_01982 (deaD_1)
Messenger RNA biogenesis [BR:
moy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVS54_01982 (deaD_1)
Ribosome biogenesis [BR:
moy03009
]
Prokaryotic type
rRNA helicases
CVS54_01982 (deaD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZS40643
UniProt:
A0A3S9WKV5
LinkDB
All DBs
Position
2017018..2018841
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AA seq
607 aa
AA seq
DB search
MLTDAPEDSPATPGFEELGITGPVLKAIKDLGYETPSPIQAATIPTLLAGRDVVGMAQTG
TGKTAAFALPVLERLDVAQKTPQALVLAPTRELALQVCEAFESYASKMKGVHVLPVYGGQ
GYGVQLSALRRGVHVIVGTPGRIMDHLAKGTLDLSQLQYLVLDEADEMLKMGFAEDVEQI
LAQTPEEKQVALFSATMPPQIRRLAQKYLREPEEISIKSKTATGTNITQRYLVVSYAQKV
DALTRILEVENFDGMIVFVRTKNETETLAEKLRARGYSAAAINGDVPQVQRERSVNQLKD
GKLDILVATDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRTGDAISFITPRE
RYLLKHIEKATRQQPTQMQLPSTEDVNTTRLTRFDDAITTALSETGRIDAFRDIIAHYVR
HHDVPESDVAAALAVVAQGDKPLLLDPANDALTRAVEADNRPQRERPTRDAREPRGERRS
RGDYTAYRIEVGRRHRVEPRQIVGALANEGGLGRDDFGAINIRPDFSTVELPSNMDPAVL
DKLRDTRISGRLIEIKPDRGPGARRSGPREDRPSGGRGDRFDRRDRDERPARESRDEKPF
RKPRHKS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
gtgctgaccgacgcccccgaggactcccccgcgacccccggattcgaggaactcggaatc
accgggcccgtcctcaaagccatcaaggacctcggctacgagaccccgtcgcccatccag
gcggccactatccctaccctcctcgccgggcgcgacgtcgtcggcatggcgcagaccgga
accggcaagaccgcggcattcgcgctgcccgtgctcgagcgtctcgatgtcgcgcagaag
acgccgcaggcgctcgtgctggctccgacccgtgagctcgccctccaggtgtgcgaggcg
ttcgagtcgtacgcgtccaagatgaagggtgttcacgtcctccccgtctacggcggacag
ggctacggcgtgcagctctcggctctgcgccgcggggtgcatgtcatcgtcgggacaccg
ggccgcatcatggatcacctcgccaagggcacactcgacctgtcgcagctgcagtacctc
gtgctcgacgaggccgacgagatgctgaagatgggcttcgcggaggatgtggagcagatc
ctcgcgcagacacccgaggagaagcaggtcgcgctgttctccgccacgatgccgccgcag
atccgccgcctcgcgcagaagtacctgcgcgagccggaagagatcagcatcaagtcgaag
accgcgacgggcacgaacatcactcagcggtacctcgtggtctcgtacgcgcagaaggtc
gacgcgctgacccgcatcctcgaagtcgagaacttcgacggcatgatcgtcttcgtccgc
accaagaacgagaccgagacgctcgccgagaagctccgcgcccgcggctactcagccgca
gccatcaacggcgacgtgcctcaggtgcagcgcgagcgcagcgtcaaccagctcaaggac
ggaaagctcgacatcctcgtcgcgaccgacgtggccgcgcgcgggctcgacgtcgagcgc
atcagccacgtcgtgaacttcgacatccccacggacaccgagtcctacgtgcaccgcatc
ggtcgcaccgggcgcgcgggacgaacgggcgacgcgatcagcttcatcaccccgcgcgag
cgctacctgctcaagcacatcgagaaggcgacccgacagcagcccactcagatgcagctg
ccgagcacggaggacgttaacaccacccggttgacccggttcgacgatgccatcaccacc
gctctctcggagaccgggcgcatcgacgcgttccgcgacatcatcgcgcactacgtccgt
catcatgatgtgccggagagcgacgtcgccgcggcgctggccgtggtcgcgcagggagac
aagcctctgctcctcgatcccgccaacgatgcgctcaccagggccgtcgaggcggacaat
cggccgcagcgggagcgccccactcgtgacgcgcgcgagcctcggggcgaacgccgcagc
cgtggcgactacaccgcctatcgcatcgaggtcggcaggcgtcaccgtgtcgagccgcgc
cagatcgtcggcgccctcgccaacgagggcggcctgggccgtgacgacttcggggcgatc
aacatccgccccgacttctcgaccgtcgagctcccgtcgaacatggatcccgccgtgctc
gacaagctccgcgacacccgcatctcgggccgcctcattgagatcaagcccgaccgcggt
cctggcgctcgacgtagcggccctcgcgaggatcgtccctccggcggtcgcggtgaccgt
ttcgatcgtcgtgaccgtgacgagcgccctgcgcgcgaaagccgggacgagaagcccttc
cgcaagccgcgccacaagagctga
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