Microbacterium oxydans: CVS54_02134
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Entry
CVS54_02134 CDS
T06672
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
moy
Microbacterium oxydans
Pathway
moy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
moy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVS54_02134 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
moy03019
]
CVS54_02134 (rnj)
Messenger RNA biogenesis [BR:
moy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CVS54_02134 (rnj)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
AZS40790
UniProt:
A0A3Q9J661
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Position
complement(2177485..2179161)
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AA seq
558 aa
AA seq
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MSIPLVEPTALDEGTLRVIPIGGLGEIGRNMTMFEYDGKILIVDCGVLFPEEHQPGVDLI
LPDFEPIRDRLEDIVGVVLTHGHEDHIGAVPYLLRLKSDIPLIGSGLTLALVEAKLKEHR
IKAFTLTVKEGQEERVGPFDLEFVAVNHSIPDALAVAIRTPAGMVLATGDFKMDQLPLDG
RITDLRAFARLGEEGVDLFLVDSTNADVPGFTPTERSIGPVLDQVIAKAPRRVIVASFSS
HVHRVQQVIDAAHANGRRVAFLGRSMVRNMTIAEQLGYLKVPDGVLIDFKKARDLPDEQI
VYMSTGSQGEPMAVLSRMANMDHAIEISEGDTVILASSLIPGNENAVYRVIDGLTKLGAN
VVHKANAKVHVSGHAAAGELIYCYNILKPKNVLPVHGEYRHLIANAKLAQDTGVPEDNTI
IASNGTVIDLKGGVAKVAGQLDLGFVYVDGSTVGEITDADLKDRRILGEEGFISVIVVVD
ATTGRIISGPEIHARGVAEDDSVFDDVTPKIVAALKEASGNGVRDTHALSQVVRRTIGRW
VNQRLRRRPMIVPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtccattcccctggtagaaccgaccgctctcgatgaagggacgctgcgggtcatcccg
atcggcgggctcggagagatcggtcgcaacatgaccatgttcgagtacgacgggaagatc
ctgatcgtcgactgcggtgtgctcttcccggaggagcaccagccgggcgtcgacctgatc
ctcccggacttcgagcccatccgtgatcgcctcgaagacatcgtcggtgtcgtgctcacg
cacggccacgaagatcacatcggcgccgtgccctacctcctgcgcctgaagagcgacatc
cctctgatcggctccgggctcaccctcgcgctggtcgaggcgaagctcaaggagcaccgc
atcaaggccttcaccctcaccgtgaaggaggggcaggaggagcgggtcggtccgttcgac
ctggagttcgtcgcggtcaaccactccatccccgacgcgctggccgtcgccatccgcacc
cccgccggcatggtcctcgcgaccggcgacttcaagatggaccagcttcccctcgacggc
cggatcaccgacctgcgcgcgttcgcccgcctcggggaagagggcgtcgatctgttcctc
gtcgattcgaccaacgccgacgttcccggcttcaccccgacggaacgctccatcggcccc
gtgctcgatcaggtgatcgcgaaggcgccgcgtcgcgtcatcgtcgccagcttctccagc
cacgtccaccgtgtgcagcaggtcatcgatgccgcacacgccaacgggcgccgcgtcgcg
ttcctcggccgcagcatggtccggaacatgacgatcgccgagcagctcggctacctgaag
gtgccggacggcgtcctgatcgacttcaagaaggcacgtgatctgcccgacgagcagatc
gtctacatgtcgacgggctcgcagggagagccgatggccgtgctcagccggatggcgaac
atggatcacgcgatcgagatcagcgagggcgacaccgtcatcctcgcctccagcctcatc
ccgggcaacgagaacgcggtgtaccgcgtgatcgacggcttgaccaagctgggcgccaac
gtcgtgcacaaggcgaacgcgaaggtgcacgtctccgggcacgccgccgcgggtgagctc
atctactgctacaacatcctgaagccgaagaatgtcctcccggtccatggcgagtaccgc
cacctcatcgcgaacgccaagctggcgcaggacaccggcgtgccggaggacaacacgatc
atcgcctcgaacggcaccgtgatcgacctcaagggcggggtcgcgaaggtcgcaggtcag
ctcgatctcgggttcgtgtacgtcgacggctcaaccgtcggcgagatcacggacgccgac
ctcaaggaccgccggatcctcggcgaggagggcttcatctcggtcatcgtcgtggtggac
gccacgaccgggcgcatcatctcgggcccggagatccatgcgcgcggcgtcgccgaggac
gactccgtgttcgacgacgtcacgcccaagatcgtcgccgcgctcaaggaggcgtccggc
aatggtgtccgtgacacccatgcgctgtcgcaggtcgtgcgacgcacgatcggtcgctgg
gtcaatcagcggcttcgtcgtcgccccatgatcgtgccgctcgtcatcgaggcgtga
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