Mycobacterium avium subsp. paratuberculosis K-10: MAP_0987
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Entry
MAP_0987 CDS
T00156
Symbol
mfd
Name
(GenBank) Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpa
Mycobacterium avium subsp. paratuberculosis K-10
Pathway
mpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MAP_0987 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpa03400
]
MAP_0987 (mfd)
Enzymes [BR:
mpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MAP_0987 (mfd)
DNA repair and recombination proteins [BR:
mpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MAP_0987 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
UB2H
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AAS03304
UniProt:
Q741V0
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All DBs
Position
1025483..1029148
Genome browser
AA seq
1221 aa
AA seq
DB search
MTAPGAARPETPIAGLVELALTAPTFQQLIDTAAASPADLSLVGPASTRLFVASALARLG
PLLVVTATGREADDLTAELRGVVGDAVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAH
PDDARLGPPLQVVVTAVRSLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAYSRVD
MVGRRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDTVISV
PCRELLLTEDVRARAAELAAQHPASEPAITGSVSDMLAKIADGIAVDGMEALLPVLRPGK
QVLLTDQLADRTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAALGTLENQAPIDVEQL
GGSGFAELDEVRAAAVRGGHPWWTLSQLSDESAVELDVRAAPSARGHQHDIDGIFAMLRA
HVSTGGHAAVVAPGTGTAHRVVERLAECDTPAAMLESGAAPRAGVVGVLKGPLHDGIVIP
GANLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTER
TVGGARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWANTKT
KARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAEMEDAFGYTETVDQLTAITEVKSD
MEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAG
FPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFG
VEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD
KQVAAALRRELLRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVVVAHGQMPEERLERT
VQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY
FLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFD
LYVRLVGEAVEAYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRRLA
AAGSDDEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRLSPI
TLPDSAQVRLKRMYPAASYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVTALQGK
PQTDVGTGTPVAAMASEEGRG
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccgggggctgctcgcccagaaaccccgatcgcggggctcgttgaattggcg
ctcaccgcgccgaccttccagcagttgatcgacaccgcggccgcatcgccggccgacctg
agcctggtgggtccagccagcacgcgactgttcgtcgccagtgcgctggcgcggttgggc
cctttgctggtagtcaccgcgaccgggcgcgaagccgacgacctgaccgctgaactgcgc
ggcgtcgtcggcgatgccgtggccgtcttcccgtcctgggagacgctgccgcacgagcgg
ctctcgcccggcgtcgacaccgtcggcgcccggttgacggtgctgcgccggctggcccac
cccgacgacgcgaggctggggccgcccctgcaggtggtggtgaccgcggtccgctcgctg
ctgcagccgatgaccccgcagctgggtctggtggagccggtgacgctgagcgtgggccag
gagatcgaattcgagcacgtgatcgcgcggctggtcgagctggcctacagcagggtcgac
atggtgggccggcgcggcgaattcgccgtgcgcggcggcattctcgacgtcttcccgccg
accgccgagcacccggtgcgggtcgagttctggggtgacgaggtcagcgagatgcggatg
ttctcggtcgccgaccagcgttccatccccgagatcgcggtcgacaccgtgatctcggtg
ccctgccgcgagctgctgctcaccgaggacgtgcgggcccgcgccgcggagctggccgcc
cagcacccggcgagcgagccggccatcaccggcagcgtcagcgacatgctggccaagatc
gccgacggcatcgcggtcgacggcatggaggcgctgctgccggtgctgcggcccggcaag
caggtgctgctgaccgatcagctggccgatcgcaccccggtgctgctgtgcgacccggag
aagatccgcacccgggcggccgacctgatcaagaccggccgcgagttcctggaggcctcc
tggtcggtcgcggcgctggggaccttggagaatcaagcgccgatcgacgtcgagcaactg
ggcggatcgggcttcgccgagctggacgaggtgcgggcggcggcggtccggggcgggcac
ccgtggtggacgctgagccagctgtccgacgagtcggcggtggagctggacgtgcgggcg
gcgccgtcggcgcgcggccatcaacacgacatcgacggcatcttcgcgatgctgcgcgcg
cacgtcagcaccggcggccacgccgccgtcgtcgcgcccggcaccgggaccgcgcaccgg
gtggtggaacggctggccgaatgcgacaccccggccgccatgctggaatccggcgcggcg
ccccgcgccggggtggtcggggtgctcaagggaccgctgcacgacggcatcgttatcccc
ggcgcgaacctggtggtgatcaccgagacggacttgaccggcagccgggtcgccgccgtg
gagggcaagcggctggcggccaagcggcgcaacaccgtcgacccgctggcgctgacggcc
ggcgacctggtggtgcacgaccagcacggcatcggccggttcgtggagatgaccgagcgc
acggtcggcggggcgcggcgcgagtacctggtgctggagtacgcgtcgtccaagcggggc
ggcggatccgacaagctttatgtcccgatggattcgctggaccagctgtcgcgctatgtc
ggcgggcaggcgccggcgctgtccaaactcggcggcagcgactgggccaacaccaagacc
aaggcgcgccgcgcggtgcgcgagatcgccggcgaactggtctcgctgtacgccaagcgg
caggccagccccgggcacgcgttctccccggacaccccgtggcaggccgagatggaggac
gccttcggctacaccgagaccgtcgaccagctgaccgcgatcaccgaggtcaagtcggac
atggaaaaaccgatcccgatggaccgggtgatctgcggcgacgtcggctacggcaagacc
gagatcgcggtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtcgccgtgctg
gtgcccaccacgctgctggccgaccagcatctgcagaccttcaccgaccggatggccggc
ttcccggtgaccgtgaagggcctgtcccggttcaccgacgcggccgaatcccgcgcggtg
atcgaggggctggccgacggctcggtcgacatcgtgatcggcacgcaccggctgctgcag
accggggtgcgctggaaggacctcggcctggtggtggtcgacgaggagcagcggttcggc
gtcgaacacaaggagcacatcaagagcctgcgcacccacgtcgacgtgctgaccatgagc
gccacgccgattcccagaacgctggagatgagcctggccggcatccgcgagatgtcgacc
atcctgaccccgccggaggagcgctacccggtgctgacctacgtcggcccgcacgacgac
aagcaggtggcggcggcgttgcggcgcgagctgctgcgcgacgggcaggccttctacgtg
cacaaccgggtcagctcgatcgaccgggcggcggcccgggtgcgcgagctggtgcccgag
gcgcgggtggtggtggtggtggcgcacgggcagatgcccgaggagcggctggaacgcacc
gtgcaggggttctggaaccgcgagtacgacatcctggtgtgcaccacgatcgtggagaca
gggctggacatctccaacgccaacacgctgatcgtcgagcgcgccgacacgttcgggctc
tcgcagctgcaccagctgcgcggccgggtggggcgcagccgcgaacggggttacgcctac
ttcctgtatccgccgcacgccccgctgaccgagacggcgtatgaccggctggccaccatc
gcccagaacaacgagctcggcgcgggcatggcggtcgcgctgaaggacctggagatccgc
ggcgcgggcaacgtgctgggggtggagcagtccgggcacgtcgccggcgtcggcttcgac
ttgtatgtgcggctggtgggcgaggccgtcgaggcgtaccgggccgcggcggacggccag
accgtcaccaccgccgaggagcccaaggacgtgcggatcgacctgccggtggacgcgcac
ctgccgccggactacatcgccagcgatcggctgcggctggaggcgtatcggcggctggcc
gccgcgggctcggacgacgagatcgacgcggtggtcgaggaactcgtcgaccgctacggg
gcgctgcccgaaccggccctgcggctggtggcggtcgcccggctgcggctgctgtgccgc
gccgccggcatcaccgaggtgtcggcgccgtcggcggccaccgtgcggctgtcgccgatc
acgctgcccgattcggcccaggtgcggctgaagcggatgtatccggccgccagctaccgg
gccaccacgtcgaccgtgcaggttcccatcccgcgcgccggcggggtgggcgcgccgcgg
ctgcgtgacgtcgagttggtgcagatggtggccaacctggtgacggcgctgcagggtaaa
ccgcagacggatgtcggcaccggcacgccggtggcggcgatggccagtgaggaggggcgc
gggtga
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integrated database retrieval system
