Mycobacterium avium subsp. paratuberculosis K-10: MAP_2267c
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Entry
MAP_2267c CDS
T00156
Symbol
rne
Name
(GenBank) Rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpa
Mycobacterium avium subsp. paratuberculosis K-10
Pathway
mpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MAP_2267c (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpa03019
]
MAP_2267c (rne)
03009 Ribosome biogenesis [BR:
mpa03009
]
MAP_2267c (rne)
Enzymes [BR:
mpa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MAP_2267c (rne)
Messenger RNA biogenesis [BR:
mpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MAP_2267c (rne)
Ribosome biogenesis [BR:
mpa03009
]
Prokaryotic type
rRNA processing factors
MAP_2267c (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AAS04584
UniProt:
Q73XP2
LinkDB
All DBs
Position
complement(2530923..2533763)
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AA seq
946 aa
AA seq
DB search
MVDGAPTADPSEESTRSGDLPDRLRVHSLARTLGTTSKRVLDALSELDGRVRSAHSTVDR
EDAVRVRDLLAAQPSAEPEPAAEDAASGGPDAGIAGEPESRLLLETPDATERPHYMPLFV
APQPLESSDDDGDADETADSDDSDGDDDEQADRPSSRRRRRGRRGRGRGRGEQGGSDGPG
DGDDDEPQNRGKKGGQSDGDDDSDGQDAEDADDSDTGDDGSADGGNRRRRRRRRRKSGSG
DDNEDGPSPDDPPNTVVHERPPRNGKNGGDDGNGSSSSEIKGIDGSTRLEAKRQRRRDGR
DAGRRRPPVLTEAEFLARREAVERVMVVRDRIRTEPPHQGSRYTQIAVLEDGIVVEHFVT
SAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGSDRKIEQA
LKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEI
LREVVPSDAGVIIRTASEGVKEDDIRGDVTRLQERWKQIEAKAIEIKEKAAGAAVALYEE
PDVLVKVIRDLFNEDFAGLIVSGDDAWNTINEYVNSVAPDLVSKVTKYEPATGPDGTPGP
DVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEQTVTKN
NLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSL
GLVQLTRKRLGTGLVEAFSTSCPNCGGRGILLHADPVDSAPSNGRKSESGGRRGRRKKSK
AEEPVVAKVPVHSPGEHPMFKAMAAGSSTQAASDEDESAAEEAGDELERKKAARAEELEA
AEDTEDLEDTEDDDEDSDDSDDEDLDDEDIDDEEDLGDDDEDLELDDDDLDTEDSDDSDD
SDDSEDSDDSEDQRDPAAERPGVSALGRPRRRRAAGRPAGPPIHAD
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
gtggtagacggtgcaccgactgcagacccatcagaagaatcgacccggtccggggacctg
cccgaccgtttgagagttcattcgctggcccgaacgctgggaaccaccagcaagcgggtg
ctggacgcgctcagcgagctggacggccgcgtgcgcagcgcgcactccacggtggaccgc
gaggacgcggtccgggtgcgtgacctgctcgccgcccagccgtcggcagaaccggagccg
gctgccgaggacgcggcgagcggcggaccggacgccgggatcgccggcgaacccgaatcc
cggctgctgctggaaacccccgacgctaccgagcggccgcattacatgccgctgttcgtc
gcgccgcagccgctggaaagcagcgacgacgacggcgatgccgacgagaccgccgactcc
gacgactcggacggcgacgacgacgagcaggccgaccggccgtccagccggcggcgccgc
cgcggccgtcgcggacgcgggcgaggccgcggcgagcagggcggatccgacgggccgggc
gacggcgacgacgacgagccgcaaaaccggggcaagaagggcggccagtcggacggcgac
gacgactccgacggccaggacgccgaggacgccgacgactccgacaccggtgacgacggc
tcggccgacggcggcaatcgccgccgccgccggcgccggcgccgcaaatccgggtccggc
gacgacaacgaggacggaccctcgcccgacgatccgcccaacaccgtcgtgcacgagcgg
cctccccgcaacggcaaaaacggcggggacgacggcaacggcagctcgagcagcgagatc
aagggcatcgacggctcgacccggttggaggccaagcggcaacgacgccgggacggccgc
gacgccggccggcgccgccccccggtgctgaccgaggccgaattcctggcgcgtcgcgag
gccgtcgaacgggtcatggtggtgcgcgaccggatccgcaccgagccgccgcatcagggc
tcgcggtacacccagatcgcggtgctcgaggacggcatcgtggtcgagcacttcgtcacc
tcggccgcttcggcgtccctggtgggcaacatctacctgggcatcgtccagaacgtgctg
ccctcgatggaggcggccttcgtcgacatcggccgcggccgcaacggcgtgctctacgcg
ggcgaggtcaactgggaggccgccgggttgggcggatccgaccgcaagatcgagcaggcg
ctcaaacccggcgactacgtcgtcgtccaggtcagcaaggatccggtcgggcacaagggc
gcccggctcaccacgcaggtgtcgttggcgggccgctacctggtttacgtgccgggggcg
tcgtcgacgggcatcagccgcaagctgcccgacaccgaacgccagcggctcaaggagatc
ctgcgcgaggtggtgccgtcggacgccggggtgatcatccggaccgcgtccgaaggggtc
aaggaagacgacatccgcggcgacgtcacccggctgcaggagcgctggaagcagatcgag
gccaaggcgatcgagatcaaggagaaggcggccggcgcggcggtggcgctctacgaagag
cccgacgtgttggtcaaggtcatccgcgacctgttcaacgaggacttcgccggcctgatc
gtctccggcgacgacgcctggaacaccatcaacgaatacgtgaattccgttgcgcccgac
ctggtttcgaaggtcaccaagtacgagccggccaccggcccggacggcacgccggggccg
gacgtgttcgcggtgcaccgcatcgacgaacaactcgccaaggcgatggaccgcaaggtg
tggctgccgtcgggcggcacgctggtgatcgaccggaccgaggccatgacggtgatcgac
gtcaacaccggcaagttcaccggctcggggggcaacctggagcagacggtgaccaagaac
aacctcgaggcggccgaggagatcgtgcgccagctgcggctgcgcgacatcggcggcatc
gtggtcatcgacttcatcgacatggtgctggagtccaaccgcgacctggtgctgcgccgg
ctgaccgaggcgctggcccgcgaccgcacccgtcatcaggtgtcggaggtgacgtcgctc
gggttggtgcagctgacccgcaagcggttgggcaccgggctggtggaggccttctcgacg
tcctgcccgaactgcggcggccgcggcatcctgctgcacgccgacccggtggactcggcc
ccgtcgaacgggcggaagtccgagtccggggggcgccgcggccggcgcaagaagagcaag
gccgaggagccggtggtggccaaggtgccggtccactcgcccggcgagcatccgatgttc
aaggcgatggccgcgggctcgtccacgcaggcggcttccgacgaggacgaatccgccgcc
gaggaggccggtgacgagctcgagcggaagaaggcggcgcgcgccgaggagctcgaagcg
gccgaggacaccgaggacctcgaggacaccgaggacgacgacgaggactccgacgactcc
gacgatgaggacctcgatgacgaggacatcgacgacgaggaagacctgggcgacgacgac
gaggacctcgagctggacgacgacgacctggacaccgaggactccgacgattccgacgat
tccgacgactcggaggattccgacgattccgaagaccagcgggacccggcggccgagcgc
ccgggcgtttcggccctcggccggccacggcgtcggcgcgcggccggccggccggccgga
ccgccgatccacgcggactga
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