Mycobacterium paraterrae: MKK62_08375
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Entry
MKK62_08375 CDS
T08203
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpaa
Mycobacterium paraterrae
Pathway
mpaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKK62_08375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpaa03019
]
MKK62_08375
03009 Ribosome biogenesis [BR:
mpaa03009
]
MKK62_08375
Enzymes [BR:
mpaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MKK62_08375
Messenger RNA biogenesis [BR:
mpaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MKK62_08375
Ribosome biogenesis [BR:
mpaa03009
]
Prokaryotic type
rRNA processing factors
MKK62_08375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UMB71253
UniProt:
A0ABY3VVP1
LinkDB
All DBs
Position
complement(5490423..5493215)
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AA seq
930 aa
AA seq
DB search
MIDGGPFSEVPEASSQGEELPERLRVHSLARVLGTTSRKVLDALTELDGRVRSAHSTVER
VDAVRVRDLLANAPAPVGATVVAADANAEAEEPESRLLLETPPVERPEYMPLFVAPQPVA
RVEVPEKSDESTASDDDDDDDDDFDGDAESDDDQADRPANRRRRRGRRGRGRGRGEQNGS
ENGSGDGPKSDKAADDDAESDDDSDDDTDDSDSTDDDNGAGDGATKRRRRRRRRKSGSGD
DAEADTPSPDDPPNTVVHERAPRAKNKPDSSNNEIQGIDGSTRLEAKRQRRRDGRDAGRR
RPPVLTEAEFLARREAVERVMVVRDKVRTEPPHPGSRYTQIAVLEDGIVVEHFVTSAASA
SLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGSNRKIEQALKPGD
YVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILKEVV
PSDAGVIIRTASEGVKEEDIRADVTRLQERWNEIAARATETKEKAAGAAVALYEEPDVLV
KVIRDLFNEDFAKLVVSGEDAWKTINDYVSSVAPELVSKLNKYEPPSDEGPDVFAVHRID
EQLAKAMDRKVWLPSGGTLVIDRTEAMTIVDVNTGKFTGSGGNLEQTVTKNNLEAAEETV
RQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKR
LGTGLIEAFSTTCPHCSGRGIMLHADPVDSAPAIGRKSESGSRRGRRSKKGKTEEQVVAT
VPAHAPGEHPMFKAMAAANGGHHDDESEHTEDAEHATDEDRADSEADEQLRKQGPQESAE
DDLDDDFDDETDDGDDDEDDTDQVDLDDDDDDLDEDDDLDDEDDADDDEDDDLDDEDDAD
DEDEDQEVAEVPARPRRRRAAARPAGPPTH
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
gtgatagacggtggcccattctcagaagttcccgaagcgtcgtcgcagggcgaggagctg
ccagaacggttgagggtccactccctggcccgagtgctgggaacgaccagccgcaaggtg
ctcgacgcactcaccgaactcgacgggcgggtccgcagcgctcattccaccgtggaacga
gtcgacgcggtccgcgtccgcgacctgctggccaacgcgccggcgccggtcggcgcgacc
gtggtggcggcggatgccaacgccgaggcggaggaaccagagtcgcgactgctgctggag
accccgccggtagagcggcccgaatacatgccgttgttcgtggcgccgcagcccgtcgcg
cgggttgaggttccggagaagtccgacgagtccaccgcctcggacgacgacgacgatgac
gacgacgacttcgacggcgatgctgaaagcgacgacgaccaggccgaccgtccagccaat
cgccgccgccgtcgggggcgccgtgggcgaggtcgtggccgtggagagcagaacggctct
gagaacggctccggcgacgggcccaaatccgacaaggcggccgacgacgacgccgagtcc
gatgacgactctgacgacgacaccgacgactccgactccaccgacgacgacaacggtgca
ggtgacggggccaccaagcgtcgtcgacgccgccgtcggcgcaagtccggctccggcgac
gacgctgaagccgacacgccgtcgccagacgacccgccgaacacggtcgtgcacgagcgg
gctccgcgtgccaagaacaagcctgactccagcaacaacgagattcagggtatcgacggt
tccacccgtctcgaagccaagcgtcagcgccgccgcgacggccgcgacgccggacgccgc
cgcccgccggtcctgaccgaagccgagttcctggcccgccgcgaggctgtcgagcgggtc
atggtcgtccgcgacaaggtccgcaccgagccgccgcaccccggcagccgctacacccag
atcgccgtgctcgaagacggcatcgtcgtcgaacacttcgtcacctcggcggcatcggcg
tcgctggtcggcaacatctatctgggcatcgtgcagaacgtgctgccttcgatggaggcg
gcgttcgtcgacatcggccgcggccgcaacggcgtgctctacgccggcgaggtgaactgg
gaggccgcgggcctgggcgggtccaaccgcaaaatcgagcaggcgctcaagcccggcgac
tacgtggtcgttcaggtcagcaaggacccggtgggccataagggggcccggctgaccacg
caggtgtcgctggccggtcgctacctggtctacgtgcccggcgcttcgtccaccggcatc
agccgcaagctgcctgacaccgagcgccagcggctcaaggagatcctcaaagaggtcgtc
ccgtccgacgcgggggtgatcatccggaccgcgtccgagggtgtcaaagaagaggacatc
cgcgccgacgtcactcgactgcaggaacgctggaacgagatcgccgcgcgagcgaccgag
accaaggagaaggcggccggcgccgcggtggcgctctacgaagagcccgacgtgttggtc
aaggtcatccgcgacttgttcaacgaggacttcgccaagctcgtggtgtccggcgaggac
gcctggaagaccatcaacgactatgtgagttcggttgcgcccgaactggtttcgaagctg
aacaaatacgagccgcccagcgatgaggggcccgacgtgttcgccgtgcaccgcatcgac
gagcagctcgccaaggcgatggaccgcaaggtgtggctgccctccgggggcacgctggtg
atcgaccggaccgaggcgatgaccatcgtcgacgtcaacaccggcaagttcaccggctcc
gggggcaacctcgagcagaccgtcaccaagaacaacctcgaggcggccgaggagacggtc
cgtcagctgcggttgcgcgacatcggcgggatcgtcgtcatcgacttcatcgacatggtc
ctcgaatccaaccgcgacctggtgttgcggcggctgaccgaagcgctggcccgcgatcgg
acccggcaccaggtctcggaggtgacctcgctgggtttggtccagctcacccgtaagcgg
ctgggcaccggcctgatcgaggccttctccacgacctgcccgcactgcagcggccggggc
atcatgctgcatgccgaccccgtcgactcggcgccggccattgggcgcaagtccgagtcc
ggcagccgccggggtcgacggtccaagaaaggcaagaccgaggagcaggtcgtcgccacc
gtgcccgcccatgcgcccggcgagcacccgatgttcaaggcgatggccgcagccaacggc
ggccaccatgacgacgagtcggagcacaccgaggacgcggagcacgcaaccgacgaggac
cgggccgattccgaagccgacgagcagttgcgtaagcagggcccgcaggagagcgccgaa
gacgacctggacgacgacttcgacgacgaaaccgacgacggtgacgacgacgaagacgac
accgaccaagtggatctcgacgacgatgacgacgacctcgacgaggacgacgacctcgat
gacgaggacgacgccgatgacgacgaggacgacgacctcgacgacgaggacgacgccgat
gacgaggacgaggaccaggaggtcgctgaggttccggcgcggcctcgtcggcgccgagca
gcagcccgacccgcaggtccaccgacgcactga
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