Mycobacterium paraterrae: MKK62_20260
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Entry
MKK62_20260 CDS
T08203
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mpaa
Mycobacterium paraterrae
Pathway
mpaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mpaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MKK62_20260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpaa03021
]
MKK62_20260
03400 DNA repair and recombination proteins [BR:
mpaa03400
]
MKK62_20260
Enzymes [BR:
mpaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MKK62_20260
Transcription machinery [BR:
mpaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MKK62_20260
DNA repair and recombination proteins [BR:
mpaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MKK62_20260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF496
Motif
Other DBs
NCBI-ProteinID:
UMB68716
LinkDB
All DBs
Position
3002529..3006479
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVERKAIEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEEIWNTFTKLAPKQLIVDENL
YRELIDRYGEYFTGAMGAESIQKLIENFDIDAEAEILRDVIKNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFFLTTEIAGDKGEYT
PATKDQPESGVYASPAEAIMAMDRGALSVRAKIKVRLTQLRPPAEIEVERFGQNGWQPGD
AWVAETTLGRVLFNELLPVGYPFVDKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FHWATRSGVTVSMADVLVPPNKGEILDAYEKEADGVEKKYQRGALNHDERNEALVEIWKE
ATDKVGEALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGILVE
LAERQPDGTLIRDPHIETSAYARTLGTDATDEAGNVVVARGEDLGDPQIDALLAAGITQV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHEDGSERLLADGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLTKEVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRADFEAENRRVVAESGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgaattggcctggccaccgcggaggacatc
cgtaattggtcctacggtgaggtcaagaagccggagaccatcaactaccgcacattgaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgactcgcgccaaggtccgtcgcgagcggatgggtcacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggtgtgccgtcccggttgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtgatcaccgcggtcgac
gacgagatgcggcacaacgagctgtccacgctcgaggccgagatggtcgtggagcgcaag
gcgatcgaggatcagcgcgacgccgacctcgaggcgcgtgcgcagaagctggaagccgac
ctggccgagttggaggccgagggcgcgaaagccgatgcgcggcgcaaggttcgtgacggt
ggcgagcgtgagatgcgccagctccgcgaccgggcccagcgcgagctggaccggctggag
gagatctggaacaccttcaccaagctggctcccaagcagctgatcgtcgacgagaacctc
taccgcgagctcatcgaccgctacggcgagtacttcaccggcgccatgggcgcggagtcg
atccagaagctcatcgagaacttcgacatcgatgccgaggccgagatcctgcgtgacgtc
atcaagaacggcaaggggcagaagaagctgcgtgccctgaagcgtctgaaagtcgttgcg
gcattccagcagtcgggcaactccccgatgggcatggtgctcgacgccgttccggtgatt
ccgccggagctgcggccaatggtgcagctcgacggtggccgctttgcgacctccgacctc
aacgatctgtaccgccgcgtgatcaaccgcaacaaccgactcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggatgcg
ctgttcgacaacggccgtcgcggccgcccggtcaccgggccgggtaaccgcccgctgaag
tcgctgtcggatctgctcaagggtaagcagggccggttccgtcagaacctgctcggtaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgtggtctgcccaagctgatggctctcgagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagtgccaagcgcatggtcgagcgtcagcgt
ccgcaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcaccgacgctgcaccgcctgggtatccaggcgttcgagccgcagctggtggagggcaag
gcaattcagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgagcgcggaggcgcaggccgaggctcgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcctcgggtcgaccgctggccatgccgcgtctggac
atggtgaccgggctgttcttcctgaccaccgaaatcgccggcgacaagggcgaatacacg
cccgccacgaaggatcagccggagtccggggtgtacgcctcgccggccgaggccatcatg
gcgatggaccgtggcgccctgagcgtgcgggccaagatcaaggttcggctgacgcagctg
cgtccgcccgccgagatcgaggtcgagcggtttggtcaaaacggttggcagccaggcgat
gcctgggtcgcggagacgacgctgggccgggtgctgttcaacgagctgttgcccgtcggg
tatccgttcgtggacaagcagatgcacaagaaggtgcaggctgcgatcatcaacgacctg
gcggagcgctacccgatgatcgtggtggcgcagaccgtcgacaagctcaaggacgccggt
ttccactgggccacccgttcgggtgtcaccgtctcgatggccgacgtgctggttcccccg
aacaagggcgagatcctcgacgcctacgagaaggaagccgacggggtcgaaaagaagtac
cagcgtggtgctttgaaccacgacgagcgcaacgaggcgttggtggagatctggaaggaa
gccaccgacaaggtcggtgaggcccttcgtgagcactacccggccgacaacccgatcatc
acgatcgtcgactcgggtgccaccggtaacttcacccagacccggacgctggccggcatg
aagggtctggtgacgaaccccaagggtgagttcatcccgcgcccgatcaagtcgtcgttc
cgtgagggcctgacggtgttggagtacttcatcaacacccacggtgcccgaaagggtctg
gcggacaccgcccttcgtaccgccgactcgggttacctgacccgtcgtctggtcgacgtg
tcgcaggacgtcatcgttcgcgagaccgactgtggcacggagcgcggcatcctggtcgag
ctggccgagcgtcagcccgacggaacgctgatccgcgacccgcacatcgaaacctcggcc
tacgcccgcactttgggcaccgacgcgaccgacgaggcaggcaatgtcgtcgtcgctcgc
ggcgaggacctgggtgacccgcagatcgacgcgctgttggcggccggcatcacgcaggtg
aaggtccgctccgtgctgacctgcactaccggtaccggtgtgtgtgcgacctgctacggc
cgctcgatggccaccggcaagctggtcgacatcggtgaggccgtgggtatcgttgcggcg
cagtcgattggtgagccgggcacgcagctgacgatgcgtaccttccaccagggtggtgtc
ggtgaggacatcaccggcggtctgccccgtgtgcaggagctgttcgaggcgcgcgtgccg
cgcggtaaggcaccgattgccgacgtcaccggacgggtgcgtttggaggatggcgagcgc
ttctacaagatcaccatcgttccggacgatggcggtgaagaggttgtctacgacaagctc
tcgaagcgtcagcgtctgcgggtgttcaagcacgaggacggctccgagcggctgctcgcc
gacggtgaccacgtcgaggtgggccagcagctgatggaaggttcggccgacccgcacgag
gtgcttcgtgtgcagggcccccgcgaggtgcagatccacctgaccaaggaggtccaggag
gtctaccgcgcacagggtgtgtccatccacgacaagcacatcgaggtgatcgtccggcag
atgctgcgccgcgtgaccatcatcgattcgggctcgacggagttcctgcccggttcgctg
atcgaccgtgccgacttcgaggcggagaaccgtcgcgtggtggccgagagcggcgagcct
gcggccgggcgtccggtgttgatgggtatcaccaaggcgtcgctggccaccgactcgtgg
ctgtccgcggcgtcgttccaggagaccacgcgcgtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggaaagctgatcccggcc
ggaaccggcatcaaccggtaccgcaacatccaggtgcagccgaccgaagaagcccgcgct
gcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcg
accggagccgcggttccgctggacgattacggctactccgactaccgatag
DBGET
integrated database retrieval system
