Methylomonas paludis: KEF85_01015
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Entry
KEF85_01015 CDS
T07508
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpad
Methylomonas paludis
Pathway
mpad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KEF85_01015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpad03019
]
KEF85_01015
03009 Ribosome biogenesis [BR:
mpad03009
]
KEF85_01015
Enzymes [BR:
mpad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KEF85_01015
Messenger RNA biogenesis [BR:
mpad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KEF85_01015
Ribosome biogenesis [BR:
mpad03009
]
Prokaryotic type
rRNA processing factors
KEF85_01015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QWF71108
UniProt:
A0A975MNH4
LinkDB
All DBs
Position
212656..214863
Genome browser
AA seq
735 aa
AA seq
DB search
MKRMLINATQAEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRVEPSLEAAFVNY
GAEKHGFLPLKEIAPQYRSHDTEDGKPAGKASVREGQEIVVQIEKEERGNKGAALTTYIS
LAGTYLVLMPNNPKAGGISRRIEGENRSELRETMAALEIPDTMGLIIRTAGSDKNVEELQ
WDLNYLMQLWEAIDRSSSEQTAPFLIFQESNVIIRALRDHLRGDIDEILIDQEASFKLVQ
NFLKQVMPHNLHKAKLYQDSVPLFSRYQIETQIEMAYKREVTLPSGGSIVIDHTEALTSI
DINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMSNKNQRDVENR
LRDALKIDRARIQIGRISRFGLMEMSRQRLRPSLGDSTQLTCPRCKGQGTIRNVESVTLA
VLRLIEEDAMKKGTERVIAHLPIDCATFLLNEKRAAIQELEARLGVSIVVLPSKHLETPS
YDIERIKSLEGLEDKASHQHIKEEDISVPEFAKQAGPKFEKAAVKEFLPDAPVPVQNKRT
STSLIQRFWQKLIGKTIEADISEKPAANSEEKPKQGRNNNRKDRVAGRNGKRHKRNPNPN
NPNNPNAAVENPNPQEAKPQTENSGAVETAAKPANNPAGTQERTSRRGRNRRRPRNAGDR
KPDANSGVEGNHQHQDRPVNVNNHGENETRQQAGTSYAYEFAERTQKSEQPAAQPAAETF
RPEPNTRPTGTDSSD
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaatgccacgcaggccgaagagctgcgtgttgctttggtagat
ggtcagaaactttacgatttcgacatcgaagttccttcaaaagaacaaaaaaaatcaaat
atttataaaggtattatcaccagagtagagcccagtcttgaggcggccttcgtcaattac
ggcgcagaaaaacacggcttcttgcctttaaaggaaattgctccgcaataccgcagtcat
gatactgaagatggtaagccggccggtaaagccagtgtccgggaaggccaggaaattgtg
gttcagatcgaaaaagaagaacgcggcaacaaaggtgcggccttaaccacctatatcagt
ctggccggcacctatctggtgttaatgcccaataatcccaaagccggcggtatttcccga
cgtatcgaaggcgaaaaccgtagcgaattgcgtgaaaccatggcggctctggaaataccg
gacactatgggcttaatcatccgcacagccggttccgacaaaaatgtcgaagaactgcaa
tgggatctaaattacctgatgcaactgtgggaagccatcgaccgctccagttccgaacag
accgcaccgtttttaatctttcaggaaagcaatgtcattattcgggcattacgcgatcat
ttacgcggtgatatcgacgaaatcctcatcgaccaggaagcctcattcaagctggtgcaa
aacttcctgaaacaagtgatgccgcacaatctgcataaagccaaactttatcaggatagt
gtgcccttgttcagccgttaccagatcgaaacccagatcgagatggcctataagcgcgaa
gtcaccctgccatcgggcggctctatcgtcatagaccacaccgaagcactgacctctatc
gatatcaactctgcccgtgccaccaagggtagcgatatcgaagaaaccgcactcaatacc
aatctggaagcggcggatgaaattgccagacaattgcgtctacgcgaccttggcggttta
tttgtcatcgattttatcgatatgatgtccaataagaaccagcgcgatgtggaaaaccgg
ttgcgcgatgccttaaaaatcgaccgggcccggatccagattggccgcatttcccggttc
ggcttgatggaaatgtccagacagcgcctaagaccgtcattgggcgattccacccagcta
acctgtccgcgttgtaaaggtcagggcaccatccgtaatgtcgaatcagtcacgctggcc
gtgttgcgtctgattgaagaagatgccatgaaaaaaggtaccgagcgcgtcattgctcat
ttaccgatagattgtgcgacctttttactcaacgaaaagcgcgcagccatccaggagctt
gaggctcgtttaggcgtcagcatcgtagtattgcccagcaaacatctggaaaccccgtcc
tacgacatagagcgcattaaatctctggagggtctggaagataaagccagccatcagcat
atcaaggaagaagatatcagcgtcccggaattcgccaaacaggccggacccaaattcgaa
aaagccgctgtaaaagagtttctgcccgatgccccggtaccagtacaaaacaaaagaacc
tcaaccagtctgattcagcggttctggcaaaaactgataggcaaaaccatagaagctgat
atcagcgaaaaacccgcagccaatagcgaagaaaaacccaaacagggtcgcaacaataat
cgtaaagacagagttgccggtcgcaatggcaagcgccataaacgtaaccccaaccccaat
aatccgaacaatcccaatgcagcggtggaaaacccaaatcctcaggaagccaagccgcag
acggaaaatagcggggcagtcgaaactgctgccaaaccggctaataatccggctgggacg
caggaacgtacttcgcgccgtggccgtaatcgccgccggccgcgtaatgccggagacaga
aaaccggatgccaatagcggcgtagagggtaatcatcagcatcaggatagaccggtaaac
gtcaataatcatggcgaaaacgaaaccagacagcaggcaggtaccagttacgcctatgag
tttgccgaacgcacccaaaaatccgaacagccggcagcacaaccagccgctgaaactttc
cgtcccgagccgaatacccggccaacgggtaccgattccagcgattaa
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