Methylomonas paludis: KEF85_02610
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Entry
KEF85_02610 CDS
T07508
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mpad
Methylomonas paludis
Pathway
mpad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KEF85_02610 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpad03021
]
KEF85_02610 (rho)
03019 Messenger RNA biogenesis [BR:
mpad03019
]
KEF85_02610 (rho)
Transcription machinery [BR:
mpad03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KEF85_02610 (rho)
Messenger RNA biogenesis [BR:
mpad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KEF85_02610 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
Spore_III_AA
AAA_25
Mor
AAA
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
QWF71397
UniProt:
A0A975MP58
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All DBs
Position
complement(539592..540848)
Genome browser
AA seq
418 aa
AA seq
DB search
MNLTELKLKQVSEIISIAETLGLENIDRARKQELIFCILKKQAKSGEDIFGDGVLEILQD
GFGFLRTPGASYLAGPDDIYVSPSQIRRFGLRTGDTVSGKIRPPKEGERYFAMLKVESIN
FESPENSKNKISFSNLTPLFANKRFRLEQGNGTSEDLTARIIDLIAPIGKGQRGLIVSPP
KAGKTMIMQSIAHAIAENNPECYLIVLLIDERPEEVTEMERCVRGEVVSSTFDEPATRHV
QVADMVIEKARRLVEHKHDVVILLDSITRLARAYNMVVPSSGKLLSGGVDANALEKPKRF
FGAARNIEEGGSLTIIATALVETGSRMDEVIFEEFKGTGNMELHLERKIAEKRVYPAINI
NRSGTRREEYLVDPDELQKTWILRKILQPMDELAASEFLLGKLKDFKTNAEFFSSMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaaccgagttaaaactaaaacaagtcagcgaaattattagcatagccgaaacc
ctgggcctggaaaatatcgacagagcccgaaagcaggagttaattttctgcattctgaag
aaacaggcaaaaagtggtgaggatatttttggtgacggtgtactggaaattcttcaggac
ggctttggctttttgcgcactccgggcgcctcttatctggccgggccagatgatatttac
gtttcccccagtcaaattcgccggtttggtttacgcaccggggacactgtcagcggcaaa
ataagaccccccaaagagggtgaacgttattttgcgatgctgaaagtagaaagcatcaat
tttgaatcgccggaaaattccaaaaacaaaatttctttctccaatctgacgccattattt
gccaataagcgtttccgtctggaacaaggcaacggcaccagtgaagacttgactgcgcgt
atcattgacctgattgcgccaatcggcaaaggccaacgtggcctgatcgtgtccccgcct
aaagccggtaaaaccatgatcatgcaaagcatagcccatgcaattgccgagaataatcct
gaatgctatctgatcgtgttgctgattgatgaacgtccagaagaggtaaccgaaatggaa
cgctgtgtgcgcggtgaagtggtttccagtacttttgacgagccggcaacccgccatgtc
caggttgcagatatggtcatcgaaaaagcccggcgcctggtggaacacaagcacgatgtg
gttattctgttagattcaattacgcgtttggccagagcttacaacatggtggtaccttcc
tccggtaaactgttgtcgggtggggtggatgccaatgctctggaaaaacctaaacgcttt
ttcggcgcggctcgcaatattgaagaaggtggcagcttgacgattattgccacggctcta
gttgaaacaggctcccgtatggatgaagtgatctttgaagaattcaaaggtaccggtaat
atggaattgcatctagaacgcaaaattgccgaaaaacgggtttatccggccatcaacatc
aaccgttccggcactcgccgcgaagagtacctggttgatccggacgagttacaaaaaacc
tggattctgcgtaaaattctgcaaccgatggatgaactggcagcttccgagtttttactg
ggcaaattaaaagattttaaaaccaatgccgagttttttagttcgatgaaacgctaa
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